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Report for CCDS28209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28209.1 Public Mus musculus 16 Dppa4 23 108 98 CCDS HistoryNCBI Gene:73693Re-query CCDS DB by CCDS ID:28209.1Re-query CCDS DB by GeneID:73693See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096045.8 ENSMUSP00000093749.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096045.8Link to Ensembl Protein Viewer:ENSMUSP00000093749.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000096045Re-query CCDS DB by Protein ID:ENSMUSP00000093749
Original member Current member NCBI NM_028610.2 NP_082886.2 Accepted alive Link to Nucleotide Sequence:NM_028610.2Link to Protein Sequence:NP_082886.2Re-query CCDS DB by Nucleotide ID:NM_028610Re-query CCDS DB by Protein ID:NP_082886Link to BLAST:NP_082886.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082886.2 296 Q8CCG4 296 100% 0 0

Chromosomal Locations for CCDS 28209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 48283818 48283841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48287878 48287995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48289039 48289205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48289328 48289378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48291014 48291314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48292911 48293106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48293699 48293732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGAGACTGCTGGAGACAAGAAGTGGAGCGCAGAAGAGCCGAAGGAAGAAGTGGAATTGCAGATGTCTA
GTCAACCAAGCACGGCTCCTGCAAAGGCTAAAGCAACGGGGAAAAAACAAAAGAAGTCGGAGACAGATAA
TGGTTGTAAACCAAAGGAGGGAAAACCACAAGACACTGAGACGCCAGGACAGACTCGTAGGAAGGTACCA
ATTCCTCCTATTCCAGAGTATCTGCCCCCAGTGAACCTGATTCACCGAGATGTTTTGCGGGCATGGTGCC
AGAAGAAACGAGTGAGCAGCAAAGGCCAGAAATTAGATGCTTATAAACGACTCCTTGCAAGGGCTTTCCC
AGAACAAATGCTGGAGTTGAGGAACGTCCCTGACTCAGCCAAAGACGCCAGGTTGAAGACAGCTCACAAA
AAAATGAAGACTGAACCGGGGGAGGAGTCTGAGGTGACAGTTCCTCTGGAAATGGTCCCTGTGCCAGAGG
AGCAGATACCTGCCCTCATTGACCCTCCTATGCTCTATGAGGAAGTCAGCACCACCGTAGTGACTACACC
TGCCACTGAGGCCGTGTTAGCATCTTGGGCCAGAATTGCATCCAATGCTAAGAAGTACGAGGCAGTGCCA
GCCGATGCTTCGTCCTCATCAGAAGTCAAAGGGGAAATGTGGTGTGTGGTTCATGGGACCAGCCTTCCTG
GGAACTCGCGTGGTTGGGTTCGGCTGCAGTTCCACGCTGGACAAGCCTGGGTACCCGATAAGAAAGGAAA
AGCCATTGCCCTCTTCCTGCTTCCGGCCTGCACATTTCCACCCCCACACCTGGAGGACAACATGCTGTGC
CCCAAGTGTGTTCATAAGAACAAGATCTTGACTAAGAGCCTCGAAGGATAA

Translation (296 aa):
METAGDKKWSAEEPKEEVELQMSSQPSTAPAKAKATGKKQKKSETDNGCKPKEGKPQDTETPGQTRRKVP
IPPIPEYLPPVNLIHRDVLRAWCQKKRVSSKGQKLDAYKRLLARAFPEQMLELRNVPDSAKDARLKTAHK
KMKTEPGEESEVTVPLEMVPVPEEQIPALIDPPMLYEEVSTTVVTTPATEAVLASWARIASNAKKYEAVP
ADASSSSEVKGEMWCVVHGTSLPGNSRGWVRLQFHAGQAWVPDKKGKAIALFLLPACTFPPPHLEDNMLC
PKCVHKNKILTKSLEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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