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Report for CCDS36253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36253.1 Public Mus musculus 11 Heatr9 23 108 98 CCDS HistoryNCBI Gene:629303Re-query CCDS DB by CCDS ID:36253.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019069.3 ENSMUSP00000019069.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019069.3Link to Ensembl Protein Viewer:ENSMUSP00000019069.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000019069Re-query CCDS DB by Protein ID:ENSMUSP00000019069
Original member NCBI NM_001045543.2 NP_001039008.1 Updated not alive Link to Nucleotide Sequence:NM_001045543.2Link to Protein Sequence:NP_001039008.1Re-query CCDS DB by Nucleotide ID:NM_001045543Re-query CCDS DB by Protein ID:NP_001039008
Current member NCBI NM_001045543.3 NP_001039008.1 Accepted alive Link to Nucleotide Sequence:NM_001045543.3Link to Protein Sequence:NP_001039008.1Re-query CCDS DB by Nucleotide ID:NM_001045543Re-query CCDS DB by Protein ID:NP_001039008Link to BLAST:NP_001039008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001039008.1 569 Q5QNV8 569 100% 0 0

Chromosomal Locations for CCDS 36253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83511762 83512127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83512368 83512454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83512834 83512885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83513265 83513338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83514502 83514621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83514705 83514794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83515174 83515356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83516618 83516748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83517115 83517172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83518171 83518227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83518434 83518490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83518710 83518836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83519106 83519290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83520585 83520634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83521964 83522036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGAGAGCCAAGAAAAACAGGCTGATTTTTTTCAAATCCCCAAGTCAATGGACTATCGAAACCGGAACA
AAAAATTCAGAAAAGCCATGGCTCCTGTTCACCTGCCCTTGTCCTGTTACAAGGTGCCAAAGGAAGCATT
TCCCCCAAGTCCAGAGTGCTGGAGGGTGCATCCAAGCAGGCCAAACGCAACGCCTTGCCTCCACTTAGAT
AAAAAGCCCGATCTCTTCACACACTGGCGCACCCTCAATGAGCAACGCAAGGAACGGGAGTCAAAATCGT
TGTTTTGGAAAAGAAGAAACTTCCCAAGGTACTTCAAAGACAGTGCCCAAATGCCAAACCTCCATGTCTC
TATCAGCAAGTTGACTTTAAAACCTAAGGAGGGACCAGGGTTGTTAGATCCCACCAAAGACCCCCTGAAG
TGGCAAAGGTTAAAGGAACTCACCAACGGCTTGAACTCCCCACAAGAGGATGAACAGTGCTATGCAGCCT
ACGCTTTAGGGCACCTGGGCATCAGTAACAAGTTTGTCATGGAAGCACTGTGGCAGGTGGCTCAAACTGG
TTCAACAAAAGTGAAGAACGAGGCCTATAAGTCCCTGGCCAGCCTAGGTTGCTTGGATAAGTCTGTGATC
AAGGCTTTCATCAAACAGTTGATGGAACACAAGGAAAGTCAAAGGCTGGAGACCCTGGTGGGGCTACGAG
TAGCGCTGAACTCCTGGGCTGCTATGCCTAAGAACAAGAAGCCCGAGGTCCCCTATGAGGAAAAGCTGGT
GCTTCTGCTGCAGAATCTGATATACAAGCCACTGAATGAAGAATCCTTAGAGGCAGCCCTGTGCTTGGGG
TTCCTGAGGCCCAGCAACAGCATAGTCCAACAGTTCTTGCTACAATGTCTGAGTAAAGGGTCCATGTCCC
AGAGGATGAAGGCACTAAGGATGCTGGTCAAGATGATGAATGTTCACTCAGCTGCTGTCACCAGGGCCAT
TTTGGAACAGCTACACTCTAATGTCATTGACGATCGCTTGGAAGCCACCCAGATGCTCAAGACTGTTGGG
CTGGAAAAGATCCAGGCACAGGGGCTGGTGAAACTTACATTTGACTTGCTCAAGAGGAAAATGTATAGTG
AACCCTTCCAAGTAATAAGGCAGGCTGTGTCTGAAACCGTGGATGTGCTCAAGATGAAGCCTTTAATAAT
GAAACTAATGGAGGCGCAACTGATGAGCCCAGATGTCAGTGACCGTCAGGAAGCAATCATCTCTTTGGGT
GCCCTGGGGATCCGTAACGAAAAGGTGTTCCATTTGCTGCTGGACATGCTAGATGCAGAAGAGACCAAGA
GTGTGAAGAAGAGCATACAAGAAACACTACTTGTTTGGGCCTCAAGAAATCCATGGATCCAAAACAAGCT
GACCAACAAGGTTTTCTTTGTGTATGACATACCGAAGGCTGTGAAGACAGAGCATACAAGGTTCCGGAAG
AAGCCAGAGAGCCCAGATGACTTGTGCATCACGGACTTTCGACGGGCTAAGCTGAACCCTTTGTTTATAA
CAAAGGCCTACAACAAGCTAGGGGAAAAGCTAGAGGCACCTGCTTTCTCATTCTATTTCTCCAAACCGAA
AAAGCAAAGGCCACAGGCCACAGGACCTTGGGAACCAAAAATCAGGGAACAACTCCGGAACATGGTGTTG
CCTCAAAATAGGTTTCTTTTTTGGCTCTAA

Translation (569 aa):
MESQEKQADFFQIPKSMDYRNRNKKFRKAMAPVHLPLSCYKVPKEAFPPSPECWRVHPSRPNATPCLHLD
KKPDLFTHWRTLNEQRKERESKSLFWKRRNFPRYFKDSAQMPNLHVSISKLTLKPKEGPGLLDPTKDPLK
WQRLKELTNGLNSPQEDEQCYAAYALGHLGISNKFVMEALWQVAQTGSTKVKNEAYKSLASLGCLDKSVI
KAFIKQLMEHKESQRLETLVGLRVALNSWAAMPKNKKPEVPYEEKLVLLLQNLIYKPLNEESLEAALCLG
FLRPSNSIVQQFLLQCLSKGSMSQRMKALRMLVKMMNVHSAAVTRAILEQLHSNVIDDRLEATQMLKTVG
LEKIQAQGLVKLTFDLLKRKMYSEPFQVIRQAVSETVDVLKMKPLIMKLMEAQLMSPDVSDRQEAIISLG
ALGIRNEKVFHLLLDMLDAEETKSVKKSIQETLLVWASRNPWIQNKLTNKVFFVYDIPKAVKTEHTRFRK
KPESPDDLCITDFRRAKLNPLFITKAYNKLGEKLEAPAFSFYFSKPKKQRPQATGPWEPKIREQLRNMVL
PQNRFLFWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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