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Report for CCDS30874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30874.1 Public Homo sapiens 1 S100A13 24 110 108 CCDS HistoryNCBI Gene:6284Re-query CCDS DB by CCDS ID:30874.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339556.8 ENSP00000344822.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339556.8Link to Ensembl Protein Viewer:ENSP00000344822.3Re-query CCDS DB by Nucleotide ID:ENST00000339556Re-query CCDS DB by Protein ID:ENSP00000344822
Original member Current member EBI ENST00000392622.3 ENSP00000376398.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392622.3Link to Ensembl Protein Viewer:ENSP00000376398.1Re-query CCDS DB by Nucleotide ID:ENST00000392622Re-query CCDS DB by Protein ID:ENSP00000376398
Original member Current member EBI ENST00000392623.5 ENSP00000376399.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392623.5Link to Ensembl Protein Viewer:ENSP00000376399.1Re-query CCDS DB by Nucleotide ID:ENST00000392623Re-query CCDS DB by Protein ID:ENSP00000376399
Original member Current member EBI ENST00000440685.7 ENSP00000392767.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440685.7Link to Ensembl Protein Viewer:ENSP00000392767.2Re-query CCDS DB by Nucleotide ID:ENST00000440685Re-query CCDS DB by Protein ID:ENSP00000392767
Original member Current member EBI ENST00000476133.6 ENSP00000507299.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000476133.6Link to Ensembl Protein Viewer:ENSP00000507299.1Re-query CCDS DB by Nucleotide ID:ENST00000476133Re-query CCDS DB by Protein ID:ENSP00000507299
Original member Current member NCBI NM_001024210.2 NP_001019381.1 Accepted alive Link to Nucleotide Sequence:NM_001024210.2Link to Protein Sequence:NP_001019381.1Re-query CCDS DB by Nucleotide ID:NM_001024210Re-query CCDS DB by Protein ID:NP_001019381Link to BLAST:NP_001019381.1
Original member Current member NCBI NM_001024211.2 NP_001019382.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001024211.2Link to Protein Sequence:NP_001019382.1Re-query CCDS DB by Nucleotide ID:NM_001024211Re-query CCDS DB by Protein ID:NP_001019382Link to BLAST:NP_001019382.1
Original member Current member NCBI NM_001024212.2 NP_001019383.1 Accepted alive Link to Nucleotide Sequence:NM_001024212.2Link to Protein Sequence:NP_001019383.1Re-query CCDS DB by Nucleotide ID:NM_001024212Re-query CCDS DB by Protein ID:NP_001019383Link to BLAST:NP_001019383.1
Original member Current member NCBI NM_001024213.2 NP_001019384.1 Accepted alive Link to Nucleotide Sequence:NM_001024213.2Link to Protein Sequence:NP_001019384.1Re-query CCDS DB by Nucleotide ID:NM_001024213Re-query CCDS DB by Protein ID:NP_001019384Link to BLAST:NP_001019384.1
Original member Current member NCBI NM_005979.3 NP_005970.1 Accepted alive Link to Nucleotide Sequence:NM_005979.3Link to Protein Sequence:NP_005970.1Re-query CCDS DB by Nucleotide ID:NM_005979Re-query CCDS DB by Protein ID:NP_005970Link to BLAST:NP_005970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019381.1 98 Q99584 98 100% 0 0
NP_001019382.1 98 Q99584 98 100% 0 0
NP_001019383.1 98 Q99584 98 100% 0 0
NP_001019384.1 98 Q99584 98 100% 0 0
NP_005970.1 98 Q99584 98 100% 0 0

Chromosomal Locations for CCDS 30874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153618895 153619038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153626320 153626472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGGCAGCAGAACCACTGACAGAGCTAGAGGAGTCCATTGAGACCGTGGTCACCACCTTCTTCACCTTTG
CAAGGCAGGAGGGCCGGAAGGATAGCCTCAGCGTCAACGAGTTCAAAGAGCTGGTTACCCAGCAGTTGCC
CCATCTGCTCAAGGATGTGGGCTCTCTTGATGAGAAGATGAAGAGCTTGGATGTGAATCAGGACTCGGAG
CTCAAGTTCAATGAGTACTGGAGATTGATTGGGGAGCTGGCCAAGGAAATCAGGAAGAAGAAAGACCTGA
AGATCAGGAAGAAGTAA

Translation (98 aa):
MAAEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSE
LKFNEYWRLIGELAKEIRKKKDLKIRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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