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Report for CCDS1047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1047.1 Public Homo sapiens 1 S100A1 24 110 108 CCDS HistoryNCBI Gene:6271Re-query CCDS DB by CCDS ID:1047.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292169.6 ENSP00000292169.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292169.6Link to Ensembl Protein Viewer:ENSP00000292169.2Re-query CCDS DB by Nucleotide ID:ENST00000292169Re-query CCDS DB by Protein ID:ENSP00000292169
Original member Current member NCBI NM_006271.2 NP_006262.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006271.2Link to Protein Sequence:NP_006262.1Re-query CCDS DB by Nucleotide ID:NM_006271Re-query CCDS DB by Protein ID:NP_006262Link to BLAST:NP_006262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006262.1 94 P23297 94 100% 0 0

Chromosomal Locations for CCDS 1047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153630522 153630662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153631698 153631841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGGGCTCTGAGCTGGAGACGGCGATGGAGACCCTCATCAACGTGTTCCACGCCCACTCGGGCAAAGAGG
GGGACAAGTACAAGCTGAGCAAGAAGGAGCTGAAAGAGCTGCTGCAGACGGAGCTCTCTGGCTTCCTGGA
TGCCCAGAAGGATGTGGATGCTGTGGACAAGGTGATGAAGGAGCTAGACGAGAATGGAGACGGGGAGGTG
GACTTCCAGGAGTATGTGGTGCTTGTGGCTGCTCTCACAGTGGCCTGTAACAATTTCTTCTGGGAGAACA
GTTGA

Translation (94 aa):
MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMKELDENGDGEV
DFQEYVVLVAALTVACNNFFWENS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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