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Report for CCDS52546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52546.1 Public Mus musculus 8 Triml2 23 108 98 CCDS HistoryNCBI Gene:622117Re-query CCDS DB by CCDS ID:52546.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163869.1 ENSMUSP00000132971.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163869.1Link to Ensembl Protein Viewer:ENSMUSP00000132971.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163869Re-query CCDS DB by Protein ID:ENSMUSP00000132971
Original member Current member EBI ENSMUST00000209200.1 ENSMUSP00000147371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209200.1Link to Ensembl Protein Viewer:ENSMUSP00000147371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209200Re-query CCDS DB by Protein ID:ENSMUSP00000147371
Original member Current member EBI ENSMUST00000210136.1 ENSMUSP00000148196.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210136.1Link to Ensembl Protein Viewer:ENSMUSP00000148196.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210136Re-query CCDS DB by Protein ID:ENSMUSP00000148196
Original member NCBI NM_001160412.1 NP_001153884.1 Updated not alive Link to Nucleotide Sequence:NM_001160412.1Link to Protein Sequence:NP_001153884.1Re-query CCDS DB by Nucleotide ID:NM_001160412Re-query CCDS DB by Protein ID:NP_001153884
Current member NCBI NM_001160412.2 NP_001153884.1 Accepted alive Link to Nucleotide Sequence:NM_001160412.2Link to Protein Sequence:NP_001153884.1Re-query CCDS DB by Nucleotide ID:NM_001160412Re-query CCDS DB by Protein ID:NP_001153884Link to BLAST:NP_001153884.1

Chromosomal Locations for CCDS 52546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 43183180 43183365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43183703 43183798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43185279 43185458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43187571 43187711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43190069 43190091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43190269 43190369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43193203 43193750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGTCCCAAGCGCCCAAGCCCCAGTTACCTGGCAACACAGAGGATCCAAACTGCGGGACACACCCGGAGC
CATCGCAGTTCTTCAGTGATGATGACCAAGTCATAGTTTGCAGCAAATGTTTCCAGTCTCCAGAGCACAA
GCAGCATGGGGCATACGGTATCCAAGAAGCTGCTGAGTATTACAGGACGTTACTCCAGGAAACCCTGGTT
ACATTGAGGGAGAAGCGTGATGCAGCTACGAGCTTACTGGCCGAAGAGCGAGAGAGAATGGTGACAATTC
AGGAAGAAGAGCAGAGGTTTAAAGAGATGATCGAGGCTGAGTATAAGATGCGATTCCAGTTACTGACTGA
AGAGGAGGAACTGGCAGCCTACAAAGTTGACCTGAACTTAAATGGACCTAATCCAGACCAGCTGATGAAG
TGTGGCACTGAGCTCATGCAGAAGTCCCAAGAAATGCTACAGAGACTTAGTCACCTGGGGAGAGAGAACA
TGGAAAAACTGAAGGCGAGTGAAGTCCGGCTTGGTGAGCACCTGCGCAGCCTCCAGACGATGATCACGGA
CCTCGAGAAGAACTGTGGGGAATCTGCCGTTGCACTGCTCCAGAATGCAAAGTGCTATTTAAAAAGGAAT
GAGTCTATACTGCTTCAGAGCCTAGAGCCAGCTCAGATAACAGACCTGAGTTTCTGCCTGATAATCGAAA
CGAGCCGTGTTCTACTGAGGCTCCAAAGACATATTACTTTGGACCCAGGCACAGCTCACCCCTCCCTAGT
CTTATCCGAAGACCTGAGAAGTGTGGGATTCCGAGAGACACCAAAGACTGGGCCTGGCACTACAAGGAGA
TTGGATTTCAGCGCTTCTGTGTTGGGTGCAGAGAGCTTCACCACGGGGAGGCATTATTGGGAGGTGGCTG
TGGGACAGGCAACCCAATGGCAGGTGGGCATATGTGACTGTACAGAGAGAAAGGACAACATTCCCGGGGC
TTCTGGAGATAAAGTCTTGCTCATGGGGTCCATGATGGGGACCGATTGTACCCTCTGGGTCTTTCCCCCT
TTAAGAAAGGTCTGTCTGAGAAACCAAATGTACAAAGTTGGAGTCTTCCTAGACTGTGAATGTGGGCAAG
TATCCTTCTACAATGTGACAGAGCAGTCCCTCATTTACAGTTTCTCTGACCTTACCTTCCGAGGAGCGAT
TAAACCAATATTTTCTCTTTGTATTCCAAATGGAGACATGAGTTCAGACTCTCTCACTGTCTGTCTTCCT
CAGACTCATCCCTGA

Translation (424 aa):
MSQAPKPQLPGNTEDPNCGTHPEPSQFFSDDDQVIVCSKCFQSPEHKQHGAYGIQEAAEYYRTLLQETLV
TLREKRDAATSLLAEERERMVTIQEEEQRFKEMIEAEYKMRFQLLTEEEELAAYKVDLNLNGPNPDQLMK
CGTELMQKSQEMLQRLSHLGRENMEKLKASEVRLGEHLRSLQTMITDLEKNCGESAVALLQNAKCYLKRN
ESILLQSLEPAQITDLSFCLIIETSRVLLRLQRHITLDPGTAHPSLVLSEDLRSVGFRETPKTGPGTTRR
LDFSASVLGAESFTTGRHYWEVAVGQATQWQVGICDCTERKDNIPGASGDKVLLMGSMMGTDCTLWVFPP
LRKVCLRNQMYKVGVFLDCECGQVSFYNVTEQSLIYSFSDLTFRGAIKPIFSLCIPNGDMSSDSLTVCLP
QTHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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