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Report for CCDS41072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41072.1 Public Mus musculus X Nalf2 23 108 98 CCDS HistoryNCBI Gene:620592Re-query CCDS DB by CCDS ID:41072.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096363.2 ENSMUSP00000094090.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096363.2Link to Ensembl Protein Viewer:ENSMUSP00000094090.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000096363Re-query CCDS DB by Protein ID:ENSMUSP00000094090
Original member Current member NCBI NM_001081283.2 NP_001074752.1 Accepted alive Link to Nucleotide Sequence:NM_001081283.2Link to Protein Sequence:NP_001074752.1Re-query CCDS DB by Nucleotide ID:NM_001081283Re-query CCDS DB by Protein ID:NP_001074752Link to BLAST:NP_001074752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074752.1 471 A2BDP1 471 100% 0 0

Chromosomal Locations for CCDS 41072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99821069 99821926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99845389 99845560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99845960 99846345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGTTCAGGGGCGCTTGGATGTGGCCCGGGAAAGACGCCGCCGCGCTGACTATCTGCTGCTGCTGCTGCT
GCTGGGCTCCCAGGCAGAGCGACAAACCTTGCGCCGATTCGGAGCGGGCGCAGCGATGGCGACTGTCCCT
GGCGTCCCTGCTCTTCTTCACCGTGCTGCTCGCTGACCATCTGTGGCTGTGCGCGGGGGCCCGGCCCCGG
GCCAGGGAGCTGAGCAGCGCCATGCGGCCGCCCTGGGGGGCCGGCCGCGAGCGGCAGCCGGTACCTCCTC
GCGCGGTGCTGCCGCCGCCGCCGCCGTCGCCTGGCGAGCCCAGCGCGTCCTCGGGCACCTGCGGCCCGCG
ATACAGCAACCTGACCAAAGCCGCCCCTGCAGCCGGCTCCGGGCCGGTCTGCAACGGCGTCCCAGAGCCC
ACCGGGCTGGACGCAGCTTGCACCAAATTGGAATCTTTGCAGAGACTTTTCGAACCGACCACCCCGGCTC
CCCCTCTGCGGCCCCCTGACTCCCCTTCCCGTGCCCCGGAGTTCCCCTCCGCCAAAAAAAACTTGCTCAA
AGGCCACTTTCGGAACTTCACTCTCTCCTTTTGCGACACCTACACAGTCTGGGACTTGCTGCTTGGCATG
GACCGCCCCGACAGCCTGGACTGCAGTTTGGACACCCTGCTGGGGGATCTACTGGCCGTAGTGGCCAGCC
CGGGCTCTGGGACCTGGGAGGCATGTAGCAATTGCATAGAGGCATACCAGCGACTGGATCGACATGCTCA
GGAAAAATATGATGAGTTCGACCTCGTGCTGCATAAATACTTACAGGCAGAAGAGTACTCTATCCGGTCC
TGCACGAAAGGCTGCAAGGCTGTCTACAAGGCCTGGCTGTGTTCAGAATACTTCAGTGTGACCCAGCAGG
AATGCCAGAACTGGGTGCCCTGCAAGCAATACTGCCTGGAGGTGCAGACCCGGTGCCCCTTTATCCTCCC
TGACAATGAAGAAATGGTGTATGGAGGCCTCCCTGGCTTTATCTGTACAGGGTTGATGGATACTTCACCA
AAGCGGCCGGAAACCAAGTGCTGTGATGTGCAGTGGGTCTCCTGTGAGTCGGAGAAGAAGAAGTTCAAGG
ACTCTGAGCCCCCTAAAACCCACCACCAGCAATTCCACCACTCCTATTTTCACCACTACCACCATCAGTA
CCACCACTACCATCCCCGCCATGAACCCCCAAGCCGAGTCAGCAACAAGCCCTCCCTGCTGCCGGTCTCT
GGGGGCTCCCGCCTCAGTCCCAGCAGGATCCGGCTCTGTGTCCTTGTTCTTATACTCCTCCATACCGTAG
TGTCCTTCTCCAGCAGCCAGAGTGGTGGGGGACTGGGACTGGAGACACTGCCTGCCCTAGAGGAGGGGCT
GACACAGGAAGAGTGA

Translation (471 aa):
MFRGAWMWPGKDAAALTICCCCCCWAPRQSDKPCADSERAQRWRLSLASLLFFTVLLADHLWLCAGARPR
ARELSSAMRPPWGAGRERQPVPPRAVLPPPPPSPGEPSASSGTCGPRYSNLTKAAPAAGSGPVCNGVPEP
TGLDAACTKLESLQRLFEPTTPAPPLRPPDSPSRAPEFPSAKKNLLKGHFRNFTLSFCDTYTVWDLLLGM
DRPDSLDCSLDTLLGDLLAVVASPGSGTWEACSNCIEAYQRLDRHAQEKYDEFDLVLHKYLQAEEYSIRS
CTKGCKAVYKAWLCSEYFSVTQQECQNWVPCKQYCLEVQTRCPFILPDNEEMVYGGLPGFICTGLMDTSP
KRPETKCCDVQWVSCESEKKKFKDSEPPKTHHQQFHHSYFHHYHHQYHHYHPRHEPPSRVSNKPSLLPVS
GGSRLSPSRIRLCVLVLILLHTVVSFSSSQSGGGLGLETLPALEEGLTQEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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