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Report for CCDS36617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36617.1 Public Mus musculus 13 Vmn1r209 23 108 98 CCDS HistoryNCBI Gene:432736Re-query CCDS DB by CCDS ID:36617.1Re-query CCDS DB by GeneID:432736See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 36617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095961.1 ENSMUSP00000093657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095961.1Link to Ensembl Protein Viewer:ENSMUSP00000093657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095961Re-query CCDS DB by Protein ID:ENSMUSP00000093657
Original member Current member EBI ENSMUST00000227265.1 ENSMUSP00000153997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227265.1Link to Ensembl Protein Viewer:ENSMUSP00000153997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227265Re-query CCDS DB by Protein ID:ENSMUSP00000153997
Original member Current member EBI ENSMUST00000227038.1 ENSMUSP00000154503.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227038.1Link to Ensembl Protein Viewer:ENSMUSP00000154503.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227038Re-query CCDS DB by Protein ID:ENSMUSP00000154503
Original member Current member NCBI NM_001013787.1 NP_001013809.1 Accepted alive Link to Nucleotide Sequence:NM_001013787.1Link to Protein Sequence:NP_001013809.1Re-query CCDS DB by Nucleotide ID:NM_001013787Re-query CCDS DB by Protein ID:NP_001013809Link to BLAST:NP_001013809.1

Chromosomal Locations for CCDS 36617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22805580 22806518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGTTTTAAAATATATTAAAGAAATTATTTTCACCTTTATAACTGTGGTTGGCACTCTGGGGAACACGT
CTGTTTTTGTGAATTATATGTTCAGTTGGTGGGGAAACCCTGAGAAGAAATCTGTACAGCTTATTCTCAT
CCACTTGGCTTTTACAAACATCATAATCCTTCTTACAAAAGGATTGCCAAAGACAGTAGCAGCTTTTGGT
TTGAGAAACTTCCTAGATGCCATAGGTTGTAAGATCATTGTTTACCTGGGGAGGGTGGCCCATGGCCTCT
CCATCTGCACCAGCAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAGTCCCAGAGCATCTAGGTGGAG
CAGACTAAGGCCAAGGTCTGCATGGCACATCCTTTTATTCTTCCTATACTTTTGGATACTCAATGCTTTA
ATGAGTATGAACCTAATCCATTCTATCACAAGTACAGATCTGAATATGTCACAGCGTAAGAATAGTAACA
ACTACTGCTATTTAATGCAAGAAAATCAGGAAATAGAATGGATATTTCTCACTCTCATGGTCCTGAGAGA
TGCAGTGTTTCAGGGTGCTATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCACCACCAG
CATGTCCTCTACCTTCAGAACTCCAACCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAAAGTG
TCCTCCTTCTGATGCTATGTTTCGTTTTCTTCTACTGGACTGATTGTGCCTTTTCCCTAATTTTTAGTCT
CTCTTCAAGGGACAATACATTGGTGGCAAATACTGAAGAATTTCTGACCCTTGGTTATGCAACTTTTAGC
CCCCTGGTGCTGATTCACAGGGATGGGCTTCTGGTTGAATGTTGGCATGCTCAGTGGGAGAAATTGAGAA
GATGTCACTCTCATTTAAATGTCCAATAG

Translation (312 aa):
MVLKYIKEIIFTFITVVGTLGNTSVFVNYMFSWWGNPEKKSVQLILIHLAFTNIIILLTKGLPKTVAAFG
LRNFLDAIGCKIIVYLGRVAHGLSICTSSLLTVVQAIIISPRASRWSRLRPRSAWHILLFFLYFWILNAL
MSMNLIHSITSTDLNMSQRKNSNNYCYLMQENQEIEWIFLTLMVLRDAVFQGAMGGASGYMVFLLHKHHQ
HVLYLQNSNLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLIFSLSSRDNTLVANTEEFLTLGYATFS
PLVLIHRDGLLVECWHAQWEKLRRCHSHLNVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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