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Report for CCDS22792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22792.1 Public Mus musculus 9 Alkbh8 23 108 98 CCDS HistoryNCBI Gene:67667Re-query CCDS DB by CCDS ID:22792.1Re-query CCDS DB by GeneID:67667See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053407.12 ENSMUSP00000061511.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053407.12Link to Ensembl Protein Viewer:ENSMUSP00000061511.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053407Re-query CCDS DB by Protein ID:ENSMUSP00000061511
Original member Current member EBI ENSMUST00000165105.1 ENSMUSP00000125996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165105.1Link to Ensembl Protein Viewer:ENSMUSP00000125996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165105Re-query CCDS DB by Protein ID:ENSMUSP00000125996
Original member Current member EBI ENSMUST00000211933.1 ENSMUSP00000148653.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211933.1Link to Ensembl Protein Viewer:ENSMUSP00000148653.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211933Re-query CCDS DB by Protein ID:ENSMUSP00000148653
Original member NCBI NM_026303.1 NP_080579.1 Updated not alive Link to Nucleotide Sequence:NM_026303.1Link to Protein Sequence:NP_080579.1Re-query CCDS DB by Nucleotide ID:NM_026303Re-query CCDS DB by Protein ID:NP_080579
Current member NCBI NM_026303.2 NP_080579.1 Accepted alive Link to Nucleotide Sequence:NM_026303.2Link to Protein Sequence:NP_080579.1Re-query CCDS DB by Nucleotide ID:NM_026303Re-query CCDS DB by Protein ID:NP_080579Link to BLAST:NP_080579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080579.1 664 Q80Y20-1 664 100% 0 0

Chromosomal Locations for CCDS 22792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 3338463 3338591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3343015 3343252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3344588 3344719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3345781 3345876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3347804 3347908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3349420 3349490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3359484 3359590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3367864 3368015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3369658 3369914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3382694 3382843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3385042 3385599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGAATATCAATCATAAAGGTGTTTTGAAACTCACTAAAATGGAAAAGAAGTTCTTAAGGAAACAGAGTA
AAGCCAGGCATGTGTTGCTGAAACATGAAGGCATCCAAGCAGTGTCTTATCCCACTCAGAGCCTGGTTAT
TGCCAATGGTGGTCTGGGTAATGGCGTGAGTAGGAAACAACTGCTTTTGACTTTGGAGAAATGTGGACCT
GTGGAAGCTCTCCTCATGCCACCTAATAAGCCATATGCATTTGTAATATTCCAAACTATTGAAGAATCCA
AGAAAGCATATTTTACCCTCAATGGAAAAGAAATCATTGATGATTTGGGGCAGAAGATCTTTCTGTACTT
GAATTTTGTTGAAAAAGCACAATGGAAAAACATGGGCCTTGAAGCCTTACCTCCAGGCCTCTTGGTGGTA
GAAGAAATTATTTCTTCTGAGGAGGAGAAAAAGCTTCTGGAGAGTGTGAATTGGACAGAAGATACAGGCA
ATCAGAATTTTCAAAGGTCCTTAAAACACAGAAGAGTGAAACATTTTGGCTATGAATTTCACTATGAGAG
CAACACTGTGGATAAAGACAAGCCCTTACCTGGGGGTCTTCCTGAGGTTTGCAGTAGCATTTTGGAGAAG
TTGTTGAAAGAAGGTTATATTAAACATAAACCAGACCAGTTGACCATAAATCAATATGAACCTGGGCATG
GAATTCCTGCCCATATTGACACGCATTCTGCATTTGAAGATGAGATTATTTCTCTCAGTTTGGGGTCAGC
GATTGTTATGGATTTCAAGCATCCAGAGGGTGTCACAGTACAAGTTATGTTACCTCGTCGGAGTTTGCTG
GTGATGACAGGAGAATCTAGATACCTTTGGACTCATGGAATTACACCTCGAAAATTTGATACCGTCCAAG
CGTCTGAGCAATTTAAAGGGGGAATAATCACCAGTGACATTGGAGACTTGACTTTAAGCAAGAGGGGAAT
GCGCACATCCTTTACGTTTAGAAAAGTGAGGCGAATGCCCTGCAATTGTAGTTACTCCTCAGTCTGCGAC
AGACAAAGGAAGGCCACACCTCCATCCCTTACAGAGAGCAGTAAAGAAGCATTGGAGTTAGAGCAAAAGC
ATGTCCATCAAGTGTACAATGAGATTGCAAGTCACTTCAGCAGCACAAGACATAGCCCATGGCCACGCAT
AGTAGAGTTCCTGAAAGCTTTGCCAAGTGGTTCCATAGTGGCAGATATCGGATGTGGAAATGGAAAATAC
CTTGGCATCAACAAGGACTTATATATGATTGGGTGTGATCGTAGCCAGAACCTTGTGGACATTTGTAGAG
AGAGGCAGTTCCAGGCCTTAGTCTGCGATGCGCTGGCTGTTCCTGTCAGAAGTGGGTCTTGTGATGCTTG
CATCTCTATTGCCGTCATTCACCACTTTGCAACTGCAGAGCGCAGAGTGGAAGCTCTCCAAGAACTTGCC
CGTCTCCTGAGACCTGGTGGGCAGGCCCTCATTTATGTCTGGGCAATGGAACAAGAGTATAAAAATCAGA
AGTCCAAGTATCTTAGAGGAAAGAGAATTAGCCAAGGAGATAAAGATGAGCTAAACAGTGCCACATCTAC
GGAAGAATTTCTAGTAAATCAAACGCCTGAGGGGGTCAATGAAGACCCAGCATTGTCTGTCAACTCCAGT
AGTATCACCAAGGAAGAAGAGTATAAGTCAAGGAAAGTTCCTAATTCTGAACTCCCTATTCATATAAATA
GGACCTGCTTTCATTCCCAAGATGTGCTGGTTCCCTGGCACCTCAAAAGAAACCCTGGTAAAGACAAAGC
TATTGAACCATCTGGTGTAGCAGGATGTCCTGACCCAAGTCCTGTGTTTCATCGTTATTACCATGTTTTC
TGTGATGGAGAATTGGAAGCTTCATGCCAGGCTGTGGGTGATGTTAGCATTCTGCAGAGCTATTACGATC
AAGGGAATTGGTGTGTTGTTCTTCAAAAGGTCTGA

Translation (664 aa):
MNINHKGVLKLTKMEKKFLRKQSKARHVLLKHEGIQAVSYPTQSLVIANGGLGNGVSRKQLLLTLEKCGP
VEALLMPPNKPYAFVIFQTIEESKKAYFTLNGKEIIDDLGQKIFLYLNFVEKAQWKNMGLEALPPGLLVV
EEIISSEEEKKLLESVNWTEDTGNQNFQRSLKHRRVKHFGYEFHYESNTVDKDKPLPGGLPEVCSSILEK
LLKEGYIKHKPDQLTINQYEPGHGIPAHIDTHSAFEDEIISLSLGSAIVMDFKHPEGVTVQVMLPRRSLL
VMTGESRYLWTHGITPRKFDTVQASEQFKGGIITSDIGDLTLSKRGMRTSFTFRKVRRMPCNCSYSSVCD
RQRKATPPSLTESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY
LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERRVEALQELA
RLLRPGGQALIYVWAMEQEYKNQKSKYLRGKRISQGDKDELNSATSTEEFLVNQTPEGVNEDPALSVNSS
SITKEEEYKSRKVPNSELPIHINRTCFHSQDVLVPWHLKRNPGKDKAIEPSGVAGCPDPSPVFHRYYHVF
CDGELEASCQAVGDVSILQSYYDQGNWCVVLQKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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