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Report for CCDS41049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41049.1 Public Mus musculus X Tab3 23 108 98 CCDS HistoryNCBI Gene:66724Re-query CCDS DB by CCDS ID:41049.1Re-query CCDS DB by GeneID:66724See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048250.9 ENSMUSP00000039668.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048250.9Link to Ensembl Protein Viewer:ENSMUSP00000039668.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048250Re-query CCDS DB by Protein ID:ENSMUSP00000039668
Original member Current member NCBI NM_001358447.1 NP_001345376.1 Accepted alive Link to Nucleotide Sequence:NM_001358447.1Link to Protein Sequence:NP_001345376.1Re-query CCDS DB by Nucleotide ID:NM_001358447Re-query CCDS DB by Protein ID:NP_001345376Link to BLAST:NP_001345376.1
Original member Current member NCBI NM_025729.4 NP_080005.2 Accepted alive Link to Nucleotide Sequence:NM_025729.4Link to Protein Sequence:NP_080005.2Re-query CCDS DB by Nucleotide ID:NM_025729Re-query CCDS DB by Protein ID:NP_080005Link to BLAST:NP_080005.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345376.1 716 Q571K4 716 100% 0 0
NP_080005.2 716 Q571K4 716 100% 0 0

Chromosomal Locations for CCDS 41049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 85609483 85609584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85613971 85615429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85616374 85616534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85621554 85621647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85624342 85624425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85628160 85628261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85630406 85630554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCGCAAAACAGTCCACAGCTTGATATTCAGGTTCTCCATGATCTTCGACAACGTTTTCCTGAAATTC
CAGAGGGTGTGGTATCCCAGTGCATGTTACAGAATAACAACAATCTAGAAGCCTGTTGTCGAGCCCTTTC
CCAGGAGAGCAGCAAATACTTGTATATGGAATACCATAGTCCAGAAGACAATAGAATGAATAGAAATCGC
CTTTTGCATATTAATTTGGGTATTCATTCTCCTAGTAGCTACCACCCAGGAGATGGAGCTCACCTTAATG
GTGGTCGGACACTGGTACATAGCTCAAGTGATGGACATATTGATCCTCAGCATACAGCAGGCAAACAGCT
GATATGTTTAGTTCAGGAACCACACTCAGCTCCAGCTGTTGTGGCTGCTACTCCCAACTATAATCCGTTT
TTTATGAATGAGCAGAACAGAAGTGCAGCTACCCCGCCTTCACAGCCACCTCAGCAGCCATCTTCCATGC
AAACAGGAATGAATCCATCTGCTATGCAAGGTCCTTCACCACCACCACCACCTCCGTCCTACATGCACAT
ACCTCGGTATAGTACAAATCCAATTACTGTTACAGTGTCCCAAAACCTTCCTTCTGGACAGACTGTGCCA
AGAGCTTTACAGATTCTTCCACAAATTCCAAGCAATCTCTATGGATCTCCTGGGTCTATTTTTATTAGAC
AGACATCTCAGAGTTCATCAGGAAGACAGACTCCTCAGAATGCTCCATGGCAGTCCTCACCACAAGGCCC
AGTGCCTCATTACAGCCAGCGTCCTTTACCTGTTTATCCACATCAACAGAACTATCAACCTTCTCAGTAT
TCTCCCAAACAACAGCAGATTCCTCAGTCAGTTTACCATTCACCACCTCCTTCTCAGTGTCCTTCCCCCT
TTAGCTCTCCACAGCATCAAGTACAACCACCCCAGCTGGGTCACCCAAGCTCTCATGTGTTTATGCCACC
CAGTCCTTCAACTACTCCACCCCACCTATATCAACAAGGACCTCCTAGTTATCAGAAACCAGGAAGTCAT
TCGGTAGCCTATCTCCCTTACACAGCATCTAGCTTACCCAAAGGTTCCATGAAGAAGATAGAAATTACAG
TTGAACCTTCTCAAAGACCTGGGACAGCAATAACTAGAAGTCCGTCACCTATCAGTAATCAACCATCTCC
AAGGAACCAGCATTCACTGTACACAGCCACCACACCACCTTCAAGTTCCCCTTCAAGAGGGATCTCTAGT
CAACCAAAACCTCCATTTAGTGTTAATCCTGTGTATATTACGTATACACAGCCAACTGGACCTTCATGTG
CTCCATCACCATCTCCTCGGGTGATACCAAATCCAACTACAGTTTTTAAAATTACTGTAGGCCGAGCAAC
AACTGAAAACCTTTTAAATTTAGTGGACCAAGAAGAACGCTCTGCAGCACCAGAACCTATTCAGCCCATT
TCAGTGATACCAGGCTCTGGGGGAGAAAAGGGAAACCACAAGTATCAAAGGAGCTCTAGTTCTGGATCAG
ATGACTATGCCTATACCCAAGCCTTGCTGTTACATCAGCGAGCAAGAATGGAGAGGTTAGCAAAGCAATT
GAAACTTGAAAAAGAGGAGCTAGAGCGGTTGAAAGCTGAAGTTAACAGTATGGAGCATGACCTGATGCAG
AGACGGCTTAGAAGAGTCAGCTGCACCACTGCAATTCCCACGCCTGAGGAAATGACAAGATTGAGAAGCA
CGAACAGACAACTCCAGATAAATGTTGACTGTACACTGAAAGAAGTTGACCTCCTTCAATCTAGAGGAAA
CTTTGATCCAAAAGCCATCAATAATTTTTATGACCACATAGAACCTGGCCCAGTTGTACCACCGAAGCCA
TCTAAAAAAGACTCCTCAGACTCCTGTGCAATTGAGAGAAAAGCCCGAAGAATTAGTGTGACTTCCAAAG
CGCCAGTAGATATCCATGACGCCCAGGCAGCAGCTGCAGATGAACATTTAAGTATCTGCAAACAGAGTGC
TCGGACACAACCCCGAGATGAGGATTATGAAGGGGCTCCGTGGAATTGTGACAGCTGTACCTTTCTCAAC
CACCCTGCACTGAATCGCTGTGAGCAGTGTGAGATGCCACGGTACACTTGA

Translation (716 aa):
MAQNSPQLDIQVLHDLRQRFPEIPEGVVSQCMLQNNNNLEACCRALSQESSKYLYMEYHSPEDNRMNRNR
LLHINLGIHSPSSYHPGDGAHLNGGRTLVHSSSDGHIDPQHTAGKQLICLVQEPHSAPAVVAATPNYNPF
FMNEQNRSAATPPSQPPQQPSSMQTGMNPSAMQGPSPPPPPPSYMHIPRYSTNPITVTVSQNLPSGQTVP
RALQILPQIPSNLYGSPGSIFIRQTSQSSSGRQTPQNAPWQSSPQGPVPHYSQRPLPVYPHQQNYQPSQY
SPKQQQIPQSVYHSPPPSQCPSPFSSPQHQVQPPQLGHPSSHVFMPPSPSTTPPHLYQQGPPSYQKPGSH
SVAYLPYTASSLPKGSMKKIEITVEPSQRPGTAITRSPSPISNQPSPRNQHSLYTATTPPSSSPSRGISS
QPKPPFSVNPVYITYTQPTGPSCAPSPSPRVIPNPTTVFKITVGRATTENLLNLVDQEERSAAPEPIQPI
SVIPGSGGEKGNHKYQRSSSSGSDDYAYTQALLLHQRARMERLAKQLKLEKEELERLKAEVNSMEHDLMQ
RRLRRVSCTTAIPTPEEMTRLRSTNRQLQINVDCTLKEVDLLQSRGNFDPKAINNFYDHIEPGPVVPPKP
SKKDSSDSCAIERKARRISVTSKAPVDIHDAQAAAADEHLSICKQSARTQPRDEDYEGAPWNCDSCTFLN
HPALNRCEQCEMPRYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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