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Report for CCDS143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
143.1 Public Homo sapiens 1 MIIP 24 110 108 CCDS HistoryNCBI Gene:60672Re-query CCDS DB by CCDS ID:143.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235332.6 ENSP00000235332.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235332.6Link to Ensembl Protein Viewer:ENSP00000235332.4Re-query CCDS DB by Nucleotide ID:ENST00000235332Re-query CCDS DB by Protein ID:ENSP00000235332
Original member Current member NCBI NM_021933.4 NP_068752.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021933.4Link to Protein Sequence:NP_068752.2Re-query CCDS DB by Nucleotide ID:NM_021933Re-query CCDS DB by Protein ID:NP_068752Link to BLAST:NP_068752.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068752.2 388 Q5JXC2-1 388 100% 0 0

Chromosomal Locations for CCDS 143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12021727 12021840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12022095 12022442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12022833 12022917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12029033 12029141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12029223 12029281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12029765 12029894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12030028 12030124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12031266 12031403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12031722 12031808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGTGGAGGCTGAGGAACTGGCACAGCTGCGGCTGCTCAATCTGGAGCTCCTGAGGCAGCTGTGGGTGG
GGCAGGATGCTGTGCGGCGGTCAGTGGCCAGGGCAGCCTCGGAGTCAAGCCTGGAATCCAGCAGCAGCTA
CAACTCAGAGACTCCATCGACCCCAGAGACGTCCTCAACTTCCTTGAGCACCTCCTGCCCACGGGGCCGG
TCCTCCGTGTGGGGCCCACCAGATGCCTGTCGAGGGGACCTCCGTGATGTGGCCAGATCGGGGGTGGCCT
CTCTCCCACCTGCCAAATGCCAGCACCAGGAGTCCCTGGGCCGACCGAGACCCCACTCAGCACCCTCGCT
GGGCACCTCAAGCCTGAGGGACCCAGAGCCCTCAGGGAGGCTGGGTGATCCAGGACCCCAGGAGGCACAG
ACCCCGAGGTCCATCCTGGCTCAACAGAGCAAGCTGTCCAAGCCCAGGGTGACCTTCTCTGAGGAGTCTG
CAGTTCCTAAGAGGAGCTGGCGCCTCAGGCCATACCTGGGCTATGACTGGATTGCAGGGTCTCTGGACAC
CAGCTCTTCCATCACCAGCCAGCCTGAGGCCTTCTTCTCCAAGCTGCAGGAGTTTCGGGAAACCAACAAG
GAGGAGTGTATCTGCAGCCATCCTGAACCCCAGTTGCCAGGCCTGCGTGAGAGCAGTGGCAGCGGCGTGG
AGGAAGACCATGAATGCGTGTACTGTTACCGTGTCAACCGGCGCCTGTTCCCGGTGCCTGTGGATCCCGG
TACCCCCTGCCGCCTGTGCAGGACACCGCGAGACCAGCAGGGCCCTGGGACCCTGGCGCAGCCAGCGCAC
GTCAGGGTGAGCATCCCGCTGTCGATCCTGGAGCCCCCGCACCGGTACCACATCCACCGGCGAAAGAGCT
TTGACGCCTCTGACACACTGGCCCTGCCCCGGCACTGCCTGCTGGGCTGGGACATTTTTCCTCCGAAGTC
TGAGAAAAGCTCAGCCCCCAGGAACCTGGACCTCTGGTCCTCTGTCTCCGCTGAGGCCCAGCACCAGAAG
CTGTCCGGCACCAGCAGCCCTTTTCACCCGGCCTCACCAATGCAGATGCTGCCCCCGACCCCGACCTGGT
CAGTGCCCCAGGTCCCTCGGCCCCACGTCCCACGGCAGAAGCCCTGA

Translation (388 aa):
MVEAEELAQLRLLNLELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGR
SSVWGPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQ
TPRSILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDWIAGSLDTSSSITSQPEAFFSKLQEFRETNK
EECICSHPEPQLPGLRESSGSGVEEDHECVYCYRVNRRLFPVPVDPGTPCRLCRTPRDQQGPGTLAQPAH
VRVSIPLSILEPPHRYHIHRRKSFDASDTLALPRHCLLGWDIFPPKSEKSSAPRNLDLWSSVSAEAQHQK
LSGTSSPFHPASPMQMLPPTPTWSVPQVPRPHVPRQKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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