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Report for CCDS24873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24873.1 Public Mus musculus 11 Arhgef15 23 108 98 CCDS HistoryNCBI Gene:442801Re-query CCDS DB by CCDS ID:24873.1Re-query CCDS DB by GeneID:442801See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065040.12 ENSMUSP00000067684.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065040.12Link to Ensembl Protein Viewer:ENSMUSP00000067684.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065040Re-query CCDS DB by Protein ID:ENSMUSP00000067684
Original member Current member EBI ENSMUST00000108671.1 ENSMUSP00000104311.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108671.1Link to Ensembl Protein Viewer:ENSMUSP00000104311.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108671Re-query CCDS DB by Protein ID:ENSMUSP00000104311
Original member NCBI NM_177566.4 NP_808234.2 Updated not alive Link to Nucleotide Sequence:NM_177566.4Link to Protein Sequence:NP_808234.2Re-query CCDS DB by Nucleotide ID:NM_177566Re-query CCDS DB by Protein ID:NP_808234
Current member NCBI NM_177566.5 NP_808234.2 Accepted alive Link to Nucleotide Sequence:NM_177566.5Link to Protein Sequence:NP_808234.2Re-query CCDS DB by Nucleotide ID:NM_177566Re-query CCDS DB by Protein ID:NP_808234Link to BLAST:NP_808234.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808234.2 849 Q5FWH6-1 849 100% 0 0

Chromosomal Locations for CCDS 24873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 68944678 68944829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68946366 68946470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68946561 68946643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68946984 68947136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68947236 68947396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68947576 68947668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68947766 68947840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68949971 68950100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68951000 68951152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68951332 68951492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68951619 68951830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68951911 68951969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68953487 68953541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68953812 68954162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68954418 68955024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGTCTGCACAGTCTCTTCCTGCAGCAACGCCCCCTACCTTGAAGCCCCCTCGGATCATCCGCCCCCGAC
CCCCATCTCGGCATAGGGCTCCACACTCCCCGGGGCCTCTCCACAATGGCTCCTCTCCGAAAGCACTTCC
TCAAATATCCAATGATGCATCGGCCTCAGTGTGCACCTCCATCTTCTGGGAGCCCCCCACGGCTTCCCTG
AAGCCCCCTGCTCTTCTGCCTCCCTCAGTTTCTAGAACCAGCCTGGACTCTCAGACTTCCCCTGACTCAC
CTTCCAGCACACCGAGTCCCAGCCCAGTGTCCCGGCGCTCCATCTCCCCAGAACCAGCTCCCTGCTCTCC
GGTGCCCCCACCCAAGCCCTCTGGGTCTTCCCGAACACCTCTGCCCTCGGGCCCTACGCCTCTCCAGGAT
GGCTCTGCTTCGGCCCCTGGCACGGTTCGTAGACTGGCCGGCAAGTTTGAATGGGGAGCTGAAGGCAAAG
CCCAGTCCTCAGACTCCCTGGAACGGTGTTCCCAAGGGAGCACGGAAGTGAATGGGGAGAAAGAGACTCC
CGAAGCCGCCCTTTCTGGGAATGGGTCCCAGGAGAACGGCACTCCCGATGCTGCCCTGGCCTGCCCTCCA
TGCTGCCCCTGTGTCTGCCATGTAGCAAAGCCTGGCCTGGAGCTCCGGTGGGTGCCTGTGGGGAGTTCTG
AGGACATCCTCAGGATCCCCTGCCGGGCATCCCCACTCCGAGCCTCCCGCTCCCGCATCAATCCTCCAGT
CATCAGTCACCCTCCAGTTGTGCTCACGTCCTATCGCTCCACTGCCGAGCGCAAACTCCTACCTCCCCTC
AAGCCCCCCAAGCCAACTAAAGTCAGACAGGATATCAGCACCTCTGAGGAGCTTCCACAGCCAGATCTGA
AACTGCCTTCAGAAGATGGGATCCAAACTGCTACAAAGGCCTGGGAAGGGGACAGACCTGAAGGAGCTCC
TCTGAATGCTCCCCCTGTAGCCTTGGAGGGAAGGGAGGAGGAAGGATTGGATGGGCTGAAGGGGCTGCAG
TGGGAACTGCCCCTGCAGGACGAACCTTTATACCAGACTTACCGAGCAGCTGTGCTGTCAGAGGAGCTGT
GGGGTGTGGGTGAGGATGGGGGTCCCTCTCCAGCTAATCCTGGAGAAGCTCCCACCTTCTCCAGGCTCCC
TGGACCTCGAAACACTCTGTGGCAGGAGCTCCCGGCTGTGAGAGGCAGTGGCCTCTTAGAGAGTCTAAGC
CCCCAGGAGCGGCGCATGCAGGAGAGCCTGTTTGAGGTGGTGACATCAGAGGCCTCCTACCTGCGATCCC
TGAGGCTGCTGACCGACACCTTCGTCCTGAGCCAGGCTCTCCGGGACACACTCACGCCTCGGGATCATCA
TACGCTGTTCTCCAACGTGCAGCGAGTCCAGAGCGTCAGTGAGCGGTTTCTAGGAACACTGCTGTCTCGT
GTTCGTTCCTCCCCACACATCACTGACCTGTGTGATGTGGTGCATGCCCATGCAGTTGGTCCTTTCTTCG
TGTATGTGGATTATGTTCGGAACCAGCAGTATCAGGAGGAGACCTATAGCCGCCTTATGGATACAAACGT
GCGCTTCTCCGCAGAGCTGCGAAGGCTGCAGAGCCTCCCCAAATGTGAGCGGCTCCCGCTGCCATCTTTC
CTGCTGCTGCCCTTCCAGCGCATCACCCGGCTGCGGATGCTGTTGCAGAATATCCTAAGCCAGACAGAAG
AGGGGTCCAGTCGTCAGGAGAACGCCCAGAAGGCTCTGGGTGCTGTGAGCAAGATCATTGAGCGCTGCAG
CGCTGAGGTGGGGCGCATGAAGCAGACGGAAGAGCTGATACGGCTCACCCAAAGGTTGCGCTTCCACAAA
GTCAAGGCTCTACCCCTGGTCTCCTGGTCACGGCGCCTGGAATTGCAGGGGGAGCTGACCGAGCTGGGGT
GTCGGAGGGGGGGTGTGCTCTTCACCTCCCGTCCACGCTTCACTCCCCTCTGCCTACTGCTCTTCAGTGA
CCTGCTGCTTATCACTCAGCCCAAGAGTGGGCAGCGGCTGCAGGTTCTGGACTATGCCCATCGCTCCCTG
GTGCAGGCCCAGCAGGTTCCTGACCCATCTGGACCCCCTACTTTCCGCCTCTCGCTTCTCAGCAACCACC
AGGGCCGCCCCACCCACAGGCTACTCCAAGCGGCCTCACTATCAGACATGCAGCGCTGGCTGGGAGCCTT
CCCCACCCCAGGTCCCCTTCCCTGTTCCCCAGACACCATCTATGAGGACTGTGAGTGTTCCCAGGAGCTA
TGTTCAGAGCCATCCACACCTTCCAAGACTGAGGGGCAAAGTCTGGAGTCCAAGGCCCCCCGAAAGCATC
TGCACAAGAATCCAGAAGGTTGGCTTAAGGGGCTTCCTGGAGCCTTCCCTGCCCAACTGGTGTGTGAAGT
CACAGGAGAACACGAGAGGAGGAAGCATCTTCGCCAGCACCAGAAGCTCCTTGAGGCTGTAGGACCCTCT
TCAGGCACTCCTGACACCCCTCAACCTTAA

Translation (849 aa):
MSAQSLPAATPPTLKPPRIIRPRPPSRHRAPHSPGPLHNGSSPKALPQISNDASASVCTSIFWEPPTASL
KPPALLPPSVSRTSLDSQTSPDSPSSTPSPSPVSRRSISPEPAPCSPVPPPKPSGSSRTPLPSGPTPLQD
GSASAPGTVRRLAGKFEWGAEGKAQSSDSLERCSQGSTEVNGEKETPEAALSGNGSQENGTPDAALACPP
CCPCVCHVAKPGLELRWVPVGSSEDILRIPCRASPLRASRSRINPPVISHPPVVLTSYRSTAERKLLPPL
KPPKPTKVRQDISTSEELPQPDLKLPSEDGIQTATKAWEGDRPEGAPLNAPPVALEGREEEGLDGLKGLQ
WELPLQDEPLYQTYRAAVLSEELWGVGEDGGPSPANPGEAPTFSRLPGPRNTLWQELPAVRGSGLLESLS
PQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSQALRDTLTPRDHHTLFSNVQRVQSVSERFLGTLLSR
VRSSPHITDLCDVVHAHAVGPFFVYVDYVRNQQYQEETYSRLMDTNVRFSAELRRLQSLPKCERLPLPSF
LLLPFQRITRLRMLLQNILSQTEEGSSRQENAQKALGAVSKIIERCSAEVGRMKQTEELIRLTQRLRFHK
VKALPLVSWSRRLELQGELTELGCRRGGVLFTSRPRFTPLCLLLFSDLLLITQPKSGQRLQVLDYAHRSL
VQAQQVPDPSGPPTFRLSLLSNHQGRPTHRLLQAASLSDMQRWLGAFPTPGPLPCSPDTIYEDCECSQEL
CSEPSTPSKTEGQSLESKAPRKHLHKNPEGWLKGLPGAFPAQLVCEVTGEHERRKHLRQHQKLLEAVGPS
SGTPDTPQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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