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Report for CCDS16999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16999.1 Public Mus musculus 2 Emilin3 23 108 98 CCDS HistoryNCBI Gene:280635Re-query CCDS DB by CCDS ID:16999.1Re-query CCDS DB by GeneID:280635See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057169.4 ENSMUSP00000059732.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057169.4Link to Ensembl Protein Viewer:ENSMUSP00000059732.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057169Re-query CCDS DB by Protein ID:ENSMUSP00000059732
Original member Current member NCBI NM_182840.2 NP_878260.1 Accepted alive Link to Nucleotide Sequence:NM_182840.2Link to Protein Sequence:NP_878260.1Re-query CCDS DB by Nucleotide ID:NM_182840Re-query CCDS DB by Protein ID:NP_878260Link to BLAST:NP_878260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878260.1 758 P59900 758 100% 0 0

Chromosomal Locations for CCDS 16999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 160907551 160909316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160909607 160909830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160910742 160910864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160912008 160912171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGGGCCGCCGTCTGTCCGTGTGGCTGTGCACCGTCGCGGCGCTGCTCTCGGGGGCGCAGGCCAAGGGCA
CCCCTCTCCTCGCGCGGCCCGCACAGCCCAGTGCCTCCCGTTACAGCCTCTACACCACCGGATGGCGTCC
GCGGCTGCGCCCGGGGCCACACAAGTCTCTCTGTGCCTATGTGGTACACAGAAATGTGACCTGCGTCCTA
CAAGAAGGAGCAGAGAGCTATATAAAGGCTGAGTACCGGAACTGTGGGTGGGGACCCAACTGCCCTTCAA
CAGTCAGGTACCGCACAGTGTTCAGACCCAGATACAAGATTGGCTACAAGACCGTGACAGACCTGGCGTG
GCGCTGCTGCCCTGGTCTTACTGGGGAAAGCTGCCCTGAACACCTCACAGACCATGGAGCCACCCCACCC
CACCAGGAGCCAGAGCCTCAGATTCCCTTGGGGCAGCTGGGCCCAGGTCCCAGGCCTTCTCCTTACAGCA
GAGAGGCCCCGCGCCCCCGTGGAAGAAAAGGCCAAGGGCCGTTTGGTGAGCGGCTAGAACAGCGCCTGTC
GCAAGCATATGGCACCCTGAGTGGATTGGTAGCCAGCCACGAGAATCCCAATAGGATCACTGGTGACTCC
AGGGCCCCTGTCGTACCTATAGGCTTTGGGGTCATCCCCGAGGGTCTTGTGGCCCCAGAAGACAGAGGCA
GAGGACCACTCATCCCTCCTCTGAGTGAGATCCTGAGCAAGGTCACAGAGGTGAGCAACACATTACAGAC
CAAGGTGCAGCTGTTAGATGAGGTGCGTGGGCTGGCCCTGGGGCATGAGGCTCACCTGCAGCGGCTCCGG
GAAGCCCCGCCATCCCCGCTGACCTCCTTAGCGCTCCTAGAGGAATACGTGGACCAGCGGCTGCAGCGAC
TCTGGGGGAGCCTGCTGGATGGCTTTGAGCAGAAGCTGCAAGGTGTCCAGAGCGAGTGTGACCTTCGGGT
GCAAGAGGTGCGGCAGCAATGTGAGGAGGGCCAGGCAGCCAGCCAGCGCTTGCATCAGAGCCTCGATGGC
CGAGAGCTTGCCTTGCGTCGGGAGCTCTCCCAGCTGGGCACTCAGCTGCAGGGCTTGACTCTGACTGGTG
GGGGCACCTGCTGCAGCCAACTGGCTTTGATCAGTGCCCGGGTGGACAGCCTTGAGAGGAACCTGCAGGC
TGTCACTGAGACCCAAGGTGGCCCGGGCACCCTGGCCGCGGATGAGCTTGCGCGCCTCTCTGCAGCTATG
CTTCAGGGAGGTGTGGACGGGCTGCTTGAAGGCCTTGAGACTATCAATGGGACAGAGAATGGAGCAAGGG
GCTGCTGTCTGAGAATGGAGGTGGGGGGCTGGGGTGTCGGTGGCTTCGGGTCCACGCTGGAACAGCGAGT
GCAGAGCCTAGAGGAGCGGCTGGCAACTCTGACCGGAGAGCTAAGCCCCGAGAGTGCCATACCAGACAGA
TCAGCGCGGCCGCTTGTTCATTCAGAACTAGCAGTACTGGAACAAAGGCTGGTGTCCCTGGAGACCTCGT
GCACCCCAAGTACCACCACAGCCATCCTGGACAACCTCGTGGCAGAGGTGAAGGCCTGGCAGAGCCGGAG
CGAGGCTCTCCTACACCAGGTGGCTCGTCACACTGCCCTGCTCCAACAGCTCAATGGCACGGTAGCTGAA
GTCCAGGGGCAGCTGGCAGAAGGGACAGGCAGCTCACTGCAAGGGGAGATCACTCTCTTGAAAGTCAACC
TGAACTCAGTGAGCAAGTCACTCACGGGCCTCAGCGACTCTGTCAGCCAGTACTCTGATGCCTTCTCGGC
TGCCAACACATCCCTGGATGAACGAGAACGAAGAGTGGAAGCCGAGGTCCACACCATCCAGGAACAGATC
AGCAGCCAGGGCTCACGGCTTCAGGCTGGCCACAGGCAGGTCCTGAACCTGCGAGGGGAGCTGGAGCAAC
TCAAGGCTGGCATGGCCAATGTGGCTAGAGGGTTGAGCCGCTGCCGGGACACAGCCCAGGAACTCCAGCA
TACAGTGGGCCACTTTGACCAGAGGGTGGCCCAAGTGGAAGGAGCATGTGAGAGGTTGGGCCTGTTGGCA
ACCCACCTGAACAGTCTGCCTACTGAGCAGCTGAGGTCCAGGGAGGGCCTGTGGGGCCACATAGACAAGC
TGAACCACACATTGGCCCAGCACACGCAGGATATCGCCCGGCTCCGGGATGACCTGTTGGACTGCAGAGC
TCAGCTGGCTGAGGTGAGGCCAGGGCGAGCTGACTAG

Translation (758 aa):
MGRRLSVWLCTVAALLSGAQAKGTPLLARPAQPSASRYSLYTTGWRPRLRPGPHKSLCAYVVHRNVTCVL
QEGAESYIKAEYRNCGWGPNCPSTVRYRTVFRPRYKIGYKTVTDLAWRCCPGLTGESCPEHLTDHGATPP
HQEPEPQIPLGQLGPGPRPSPYSREAPRPRGRKGQGPFGERLEQRLSQAYGTLSGLVASHENPNRITGDS
RAPVVPIGFGVIPEGLVAPEDRGRGPLIPPLSEILSKVTEVSNTLQTKVQLLDEVRGLALGHEAHLQRLR
EAPPSPLTSLALLEEYVDQRLQRLWGSLLDGFEQKLQGVQSECDLRVQEVRQQCEEGQAASQRLHQSLDG
RELALRRELSQLGTQLQGLTLTGGGTCCSQLALISARVDSLERNLQAVTETQGGPGTLAADELARLSAAM
LQGGVDGLLEGLETINGTENGARGCCLRMEVGGWGVGGFGSTLEQRVQSLEERLATLTGELSPESAIPDR
SARPLVHSELAVLEQRLVSLETSCTPSTTTAILDNLVAEVKAWQSRSEALLHQVARHTALLQQLNGTVAE
VQGQLAEGTGSSLQGEITLLKVNLNSVSKSLTGLSDSVSQYSDAFSAANTSLDERERRVEAEVHTIQEQI
SSQGSRLQAGHRQVLNLRGELEQLKAGMANVARGLSRCRDTAQELQHTVGHFDQRVAQVEGACERLGLLA
THLNSLPTEQLRSREGLWGHIDKLNHTLAQHTQDIARLRDDLLDCRAQLAEVRPGRAD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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