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Report for CCDS28324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28324.1 Public Mus musculus 16 Olig1 23 108 98 CCDS HistoryNCBI Gene:50914Re-query CCDS DB by CCDS ID:28324.1Re-query CCDS DB by GeneID:50914See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056882.6 ENSMUSP00000061408.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056882.6Link to Ensembl Protein Viewer:ENSMUSP00000061408.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056882Re-query CCDS DB by Protein ID:ENSMUSP00000061408
Original member Current member NCBI NM_016968.4 NP_058664.2 Accepted alive Link to Nucleotide Sequence:NM_016968.4Link to Protein Sequence:NP_058664.2Re-query CCDS DB by Nucleotide ID:NM_016968Re-query CCDS DB by Protein ID:NP_058664Link to BLAST:NP_058664.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058664.2 260 Q9JKN5 260 100% 0 0

Chromosomal Locations for CCDS 28324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91269877 91270659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGTACTATGCGATTTCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTG
GAGACGTGCAGCTCGGGGCCTCGCTGTATGAGCTGGTGGGTTACAGGCAGCCACCTATCTCCTCATCCTC
ATCCTCATCCTCTTCCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAAGGCCGAAGCTCCGCTCGCT
GAACCTCGGGGACCTGCGCCAGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGC
AGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAACTTGGCCATGGACGCGCT
GCGCGAAGTTATCCTACCCTACTCGGCAGCGCACTGCCAGGGCGCGCCGGGCCGCAAGCTCTCCAAGATT
GCCACGCTGCTGCTCGCCCGCAACTACATCCTGCTGCTGGGTAGCTCGCTGCAGGAGCTGCGCCGCGCGC
TCGGCGACGGTGCGGGACCCGCCGCCCCGCGCCTGCTCCTCGCTGGCCTGCCTCTTCTGGCTGCCGCGCC
GGGCTCTGTGCTGCTGGCACCCGGTGCCGTGGGACCCCCCGAAACGCTGCGCCCCACCAAGTACCTGTCT
CTAGCGCTCGACGAGCCACCGTGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGTAGCCCTGGCCTCT
GCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGCAGCGGTGCAGGCCCA
GTTCTCCAAGTGA

Translation (260 aa):
MYYAISQARVNAAPATMLRPQRPGDVQLGASLYELVGYRQPPISSSSSSSSSTASLLPKPAREKAEAPLA
EPRGPAPESGGARADAKEEQQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKI
ATLLLARNYILLLGSSLQELRRALGDGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPETLRPTKYLS
LALDEPPCGQFSLPAGGAGSPGLCSCAVCKFPHLVPAGLGLAAVQAQFSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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