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Report for CCDS7592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7592.1 Public Homo sapiens 10 ATRNL1 24 110 108 CCDS HistoryNCBI Gene:26033Re-query CCDS DB by CCDS ID:7592.1Re-query CCDS DB by GeneID:26033See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7592.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355044.8 ENSP00000347152.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355044.8Link to Ensembl Protein Viewer:ENSP00000347152.3Re-query CCDS DB by Nucleotide ID:ENST00000355044Re-query CCDS DB by Protein ID:ENSP00000347152
Original member Current member NCBI NM_207303.4 NP_997186.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207303.4Link to Protein Sequence:NP_997186.1Re-query CCDS DB by Nucleotide ID:NM_207303Re-query CCDS DB by Protein ID:NP_997186Link to BLAST:NP_997186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997186.1 1379 Q5VV63-1 1379 100% 0 0

Chromosomal Locations for CCDS 7592.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 115093751 115094043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115120185 115120268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115121699 115121812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115127593 115127721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115129327 115129535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115160040 115160214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115165558 115165645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115171037 115171292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115215697 115215880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115241571 115241725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115265193 115265277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115266797 115267005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115268326 115268444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115281355 115281487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115286216 115286397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115300034 115300247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115301855 115302043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115315518 115315736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115334282 115334419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115394659 115394752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115426250 115426302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115461941 115462035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115467174 115467252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115469172 115469329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115519263 115519324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115549458 115549536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115727248 115727355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115847877 115847991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115944658 115944779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4140 nt):
ATGGAGACTGGGGGCCGGGCCCGCACTGGTACCCCGCAGCCAGCGGCCCCGGGGGTGTGGAGGGCTCGGC
CGGCGGGCGGCGGCGGCGGGGGCGCCTCCTCCTGGCTGCTGGACGGGAACAGCTGGCTGCTGTGCTATGG
CTTCCTCTACCTGGCGCTCTACGCGCAGGTGTCCCAGTCCAAGCCGTGCGAGAGGACCGGCTCCTGCTTC
TCGGGCCGCTGTGTCAACTCCACCTGCCTCTGCGACCCGGGCTGGGTGGGGGACCAGTGCCAGCACTGCC
AGGGCAGGTTCAAGTTAACAGAACCTTCTGGATATTTAACAGATGGCCCAATTAACTATAAATATAAAAC
TAAATGTACTTGGCTCATTGAAGGCTATCCAAATGCAGTGTTAAGATTAAGATTCAATCATTTTGCTACA
GAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCAATATATGCACCTTTAATAGCTGTACTTA
GTGGTTTGATAGTCCCTGAAATAAGGGGCAATGAAACTGTGCCTGAAGTTGTTACTACATCTGGCTATGC
ACTGTTACATTTTTTTAGTGATGCTGCGTATAATCTAACTGGTTTCAACATTTTCTATTCAATCAATTCT
TGTCCTAACAATTGCTCTGGTCATGGGAAGTGTACAACTAGTGTCTCTGTTCCAAGTCAAGTATATTGTG
AATGTGATAAATACTGGAAGGGTGAAGCTTGTGATATTCCTTACTGTAAAGCCAATTGCGGCAGTCCAGA
TCACGGTTACTGTGACCTGACTGGAGAAAAATTATGTGTCTGCAATGATAGTTGGCAAGGTCCTGATTGT
TCTTTGAATGTTCCCTCTACTGAGTCTTACTGGATTCTGCCAAACGTTAAACCCTTCAGTCCTTCTGTAG
GTCGGGCTTCACATAAAGCAGTTTTACACGGGAAATTTATGTGGGTGATTGGTGGATATACTTTTAACTA
CAGTTCTTTTCAAATGGTCCTAAATTACAATTTAGAAAGCAGTATATGGAATGTAGGAACTCCATCAAGG
GGACCTCTCCAGAGATATGGACACTCTCTTGCTTTATATCAGGAAAACATCTTTATGTATGGAGGCAGAA
TTGAAACAAATGATGGCAATGTCACAGATGAATTATGGGTTTTTAACATACATAGTCAGTCATGGAGTAC
AAAAACTCCTACTGTTCTTGGACATGGTCAGCAGTATGCTGTGGAGGGACATTCAGCACATATTATGGAG
TTGGATAGTAGAGATGTTGTCATGATCATAATATTTGGATATTCTGCAATATATGGTTATACAAGCAGCA
TACAGGAATACCATATCTCATCAAACACTTGGCTTGTTCCAGAAACTAAAGGAGCTATTGTACAAGGTGG
ATATGGCCATACTAGTGTGTATGATGAAATAACAAAGTCCATTTATGTTCATGGAGGGTATAAAGCATTG
CCAGGGAACAAATATGGATTGGTTGATGATCTTTATAAATATGAAGTTAACACTAAGACTTGGACTATTT
TGAAAGAAAGTGGGTTTGCCAGATACCTTCATTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGG
AGGAAATACCCATAATGACACTTCCTTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATAT
GACATAGCTTGTGATGAATGGAAAATACTACCAAAACCAAATCTTCATAGAGATGTCAACAGATTTGGAC
ACTCTGCAGTAGTCATTAACGGGTCCATGTATATATTTGGGGGATTTTCTAGTGTACTCCTTAATGATAT
CCTTGTATACAAGCCTCCAAATTGCAAGGCTTTCAGAGATGAAGAACTTTGTAAAAATGCTGGTCCAGGG
ATAAAATGTGTTTGGAATAAAAATCACTGTGAATCTTGGGAATCTGGGAATACTAATAATATTCTTAGAG
CAAAGTGCCCTCCTAAAACAGCTGCTTCTGATGACAGATGTTACAGATATGCAGATTGTGCCAGCTGTAC
TGCCAATACAAATGGGTGCCAATGGTGTGATGACAAGAAATGCATTTCGGCAAATAGTAACTGCAGTATG
TCTGTCAAGAACTACACCAAATGTCATGTGAGAAATGAGCAGATTTGTAACAAACTTACCAGCTGTAAAA
GCTGTTCACTAAACTTGAATTGCCAGTGGGATCAGAGACAGCAAGAATGCCAGGCTTTACCAGCTCATCT
TTGTGGAGAAGGATGGAGTCATATTGGGGATGCTTGTCTTAGAGTCAATTCCAGTAGAGAAAACTATGAC
AATGCAAAACTTTATTGCTATAATCTTAGTGGAAATCTTGCTTCATTAACAACCTCAAAAGAAGTAGAAT
TTGTTCTGGATGAAATACAGAAGTATACACAACAGAAAGTATCACCTTGGGTAGGCTTGCGCAAGATCAA
TATATCCTATTGGGGATGGGAAGACATGTCTCCTTTTACAAACACAACACTACAGTGGCTTCCTGGCGAA
CCCAATGATTCTGGGTTTTGTGCATATCTGGAAAGGGCTGCAGTGGCAGGCTTAAAAGCTAATCCTTGTA
CATCTATGGCAAATGGCCTTGTCTGTGAAAAACCTGTTGTTAGTCCAAATCAAAATGCGAGGCCGTGCAA
AAAGCCATGCTCTCTGAGGACATCATGTTCCAACTGTACAAGCAATGGCATGGAGTGTATGTGGTGCAGC
AGTACGAAACGATGTGTTGACTCTAATGCCTATATCATCTCTTTTCCATATGGACAATGTCTAGAGTGGC
AAACTGCCACCTGCTCCCCTCAAAATTGTTCTGGATTGAGAACCTGTGGACAGTGTTTGGAACAGCCTGG
ATGTGGCTGGTGCAATGATCCTAGTAATACAGGAAGAGGACATTGCATTGAAGGTTCTTCACGGGGACCA
ATGAAGCTTATTGGAATGCACCACAGTGAGATGGTTCTTGACACCAATCTTTGCCCCAAAGAAAAGAACT
ATGAGTGGTCCTTTATCCAGTGTCCAGCTTGCCAGTGTAATGGACATAGCACTTGCATCAATAATAATGT
GTGCGAACAGTGTAAAAATCTCACCACAGGAAAGCAGTGTCAAGATTGTATGCCAGGTTATTATGGAGAT
CCAACCAATGGTGGACAGTGCACAGCTTGTACATGCAGTGGCCATGCAAATATCTGTCATCTGCACACAG
GAAAATGTTTCTGCACAACTAAAGGAATAAAAGGTGACCAATGCCAATTATGTGACTCTGAAAATCGCTA
TGTTGGTAATCCACTTAGAGGAACATGTTATTACAGCCTTTTGATTGATTATCAATTTACCTTCAGCTTA
TTACAGGAAGATGATCGCCACCATACTGCCATAAACTTTATAGCAAACCCAGAACAGTCGAACAAAAATC
TGGATATATCAATTAATGCATCAAACAACTTTAATCTCAACATTACGTGGTCTGTCGGTTCAACAGCTGG
AACAATATCTGGGGAAGAGACTTCTATAGTTTCCAAGAATAATATAAAGGAATACAGAGATAGTTTTTCC
TATGAAAAATTTAACTTTAGAAGCAATCCTAACATTACATTCTATGTGTACGTCAGCAACTTTTCCTGGC
CTATTAAAATACAGATTGCATTCTCACAACACAATACAATCATGGACCTTGTGCAGTTTTTTGTCACCTT
CTTCAGTTGTTTCCTATCCTTATTGCTGGTGGCTGCTGTGGTATGGAAGATCAAACAAACTTGTTGGGCT
TCTCGACGGAGAGAGCAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATG
TAGCTCTGGAAGTGGGAGCTGAACAAACAGAGTTTCTGCGAGGGCCATTAGAGGGGGCACCCAAGCCAAT
TGCCATTGAACCATGTGCTGGGAACAGAGCTGCTGTTCTGACTGTGTTTCTTTGTCTACCACGAGGATCA
TCAGGTGCCCCTCCCCCTGGGCAGTCAGGCCTTGCAATTGCCAGTGCCCTAATAGATATTTCACAACAGA
AAGCTTCAGATAGTAAAGATAAGACTTCTGGAGTCCGGAATCGAAAACACCTTTCAACACGTCAAGGAAC
TTGTGTCTGA

Translation (1379 aa):
METGGRARTGTPQPAAPGVWRARPAGGGGGGASSWLLDGNSWLLCYGFLYLALYAQVSQSKPCERTGSCF
SGRCVNSTCLCDPGWVGDQCQHCQGRFKLTEPSGYLTDGPINYKYKTKCTWLIEGYPNAVLRLRFNHFAT
ECSWDHMYVYDGDSIYAPLIAVLSGLIVPEIRGNETVPEVVTTSGYALLHFFSDAAYNLTGFNIFYSINS
CPNNCSGHGKCTTSVSVPSQVYCECDKYWKGEACDIPYCKANCGSPDHGYCDLTGEKLCVCNDSWQGPDC
SLNVPSTESYWILPNVKPFSPSVGRASHKAVLHGKFMWVIGGYTFNYSSFQMVLNYNLESSIWNVGTPSR
GPLQRYGHSLALYQENIFMYGGRIETNDGNVTDELWVFNIHSQSWSTKTPTVLGHGQQYAVEGHSAHIME
LDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGAIVQGGYGHTSVYDEITKSIYVHGGYKAL
PGNKYGLVDDLYKYEVNTKTWTILKESGFARYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAY
DIACDEWKILPKPNLHRDVNRFGHSAVVINGSMYIFGGFSSVLLNDILVYKPPNCKAFRDEELCKNAGPG
IKCVWNKNHCESWESGNTNNILRAKCPPKTAASDDRCYRYADCASCTANTNGCQWCDDKKCISANSNCSM
SVKNYTKCHVRNEQICNKLTSCKSCSLNLNCQWDQRQQECQALPAHLCGEGWSHIGDACLRVNSSRENYD
NAKLYCYNLSGNLASLTTSKEVEFVLDEIQKYTQQKVSPWVGLRKINISYWGWEDMSPFTNTTLQWLPGE
PNDSGFCAYLERAAVAGLKANPCTSMANGLVCEKPVVSPNQNARPCKKPCSLRTSCSNCTSNGMECMWCS
STKRCVDSNAYIISFPYGQCLEWQTATCSPQNCSGLRTCGQCLEQPGCGWCNDPSNTGRGHCIEGSSRGP
MKLIGMHHSEMVLDTNLCPKEKNYEWSFIQCPACQCNGHSTCINNNVCEQCKNLTTGKQCQDCMPGYYGD
PTNGGQCTACTCSGHANICHLHTGKCFCTTKGIKGDQCQLCDSENRYVGNPLRGTCYYSLLIDYQFTFSL
LQEDDRHHTAINFIANPEQSNKNLDISINASNNFNLNITWSVGSTAGTISGEETSIVSKNNIKEYRDSFS
YEKFNFRSNPNITFYVYVSNFSWPIKIQIAFSQHNTIMDLVQFFVTFFSCFLSLLLVAAVVWKIKQTCWA
SRRREQLLRERQQMASRPFASVDVALEVGAEQTEFLRGPLEGAPKPIAIEPCAGNRAAVLTVFLCLPRGS
SGAPPPGQSGLAIASALIDISQQKASDSKDKTSGVRNRKHLSTRQGTCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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