NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37268.1 Public Mus musculus 16 Ypel1 23 108 98 CCDS HistoryNCBI Gene:106369Re-query CCDS DB by CCDS ID:37268.1Re-query CCDS DB by GeneID:106369See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035682.15 ENSMUSP00000039760.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035682.15Link to Ensembl Protein Viewer:ENSMUSP00000039760.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035682Re-query CCDS DB by Protein ID:ENSMUSP00000039760
Original member Current member EBI ENSMUST00000231394.1 ENSMUSP00000156275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231394.1Link to Ensembl Protein Viewer:ENSMUSP00000156275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231394Re-query CCDS DB by Protein ID:ENSMUSP00000156275
Original member Current member NCBI NM_023249.6 NP_075738.1 Accepted alive Link to Nucleotide Sequence:NM_023249.6Link to Protein Sequence:NP_075738.1Re-query CCDS DB by Nucleotide ID:NM_023249Re-query CCDS DB by Protein ID:NP_075738Link to BLAST:NP_075738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075738.1 118 Q9ESC7 118 100% 0 0

Chromosomal Locations for CCDS 37268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17077938 17078054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17081598 17081641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17082068 17082176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17084516 17084602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGTGAAAATGACCAAGTCCAAAACTTTCCAAGCTTATCTGCCACACTGTCACCGAACTTACAGCTGCA
TCCACTGCAGAGCCCATCTGGCCAATCACGATGAGCTTATCTCCAAGTCCTTTCAGGGAAGCCAGGGGCG
AGCCTACCTCTTCAACTCTGTGGTGAATGTGGGCTGTGGCCCCGCTGAGGAGAGAGTCCTTCTAACCGGG
CTGCATGCAGTGGCCGACATCTACTGTGAGAACTGCAAGACCACACTCGGGTGGAAATACGAACATGCCT
TTGAGAGCAGTCAGAAATACAAGGAAGGAAAATTTATTATTGAACTTGCCCACATGATCAAAGACAACGG
CTGGTAA

Translation (118 aa):
MVKMTKSKTFQAYLPHCHRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTG
LHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH