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Report for CCDS70197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70197.1 Public Mus musculus 11 Zkscan17 23 108 98 CCDS HistoryNCBI Gene:268417Re-query CCDS DB by CCDS ID:70197.1Re-query CCDS DB by GeneID:268417See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101150.8 ENSMUSP00000098709.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101150.8Link to Ensembl Protein Viewer:ENSMUSP00000098709.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101150Re-query CCDS DB by Protein ID:ENSMUSP00000098709
Original member Current member NCBI NM_001291014.1 NP_001277943.1 Accepted alive Link to Nucleotide Sequence:NM_001291014.1Link to Protein Sequence:NP_001277943.1Re-query CCDS DB by Nucleotide ID:NM_001291014Re-query CCDS DB by Protein ID:NP_001277943Link to BLAST:NP_001277943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277943.1 429 Q5SXI5-3 429 100% 0 0

Chromosomal Locations for CCDS 70197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59487066 59487817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59492115 59492228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59493171 59493281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59493715 59493847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59499544 59499620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59502920 59503022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTCAGCAGAGTCCCAGAGCTACCCTGATGCCCCGCCTGGGGCTCTAGTACAGGGCACTGGGCTTCTAA
GCAGATCACCAGGCCAGCCTAGCGAAGACTTAGTTCCGCAAGATGCGTTCGTTGTGCAGGAGCAGAGCAT
CAGGGATGCCCAGCCCGTGGCCACCTGCCAGCTTCCCCCGAACCGAGTCTCCCCATTTAAGGACATGATT
TTATGCTTCTCAGAAGAGGACTGGTCCCTTCTGGACCCGGCACAGACTGGTTTCTATGGCGAATTCATCA
TTGGGGAAGACTATGCAGTCTCCATGCCTCCAAATGAGCCTCCAGTTCAGCCAGGCCACTCCCATGAAGA
GGAGAACGGGTTGCGGGTCACAGAGTGGACGACAGACCTCCAGGATAAAGAAATCCCCCAGGCCTCCTGC
TTAGACCTTTCCAGCCTCCAGCCATTCCAAGGAGAAGAAAGAAGGAAGTGGGAGGAGCTGCAGGTGCCAG
AGCTCCAGCCCTGCCCACAGGTGGTGCTCAGTCAGAGTCCCTGTCCAGCAGGAGGTGACCCGCCAGCCCT
CAAGAGCAGTCTGGACCAGGAGGTGACCATCGAGATCGTGCTGTCCAGCTCTGGGGATGAGGACTCCCAG
CACAGCCCATACTGCACAGAGGAGCTGAGGAGCCCTCCAGAAGACCTGCACAGTGTCCCAGCCCACCAGA
GCAACGCTAGTGCTGAGGGGGAGGTGCAAACCTCACAGAAATCTTACGTGTGCCCAAACTGTGGAAAGAT
CTTCCGCTGGAGGGTCAACTTCATCCGGCACCTGCGCAGCCGCAGGGAGCAGAAGCCACACAAATGCTCA
GTGTGCGGGGAGTTATTCAGTGACAGCGAGGACCTGGATGGTCACCTAGAGACCCACGAGGCCCAGAAGC
CCTACAGGTGCACTGCCTGCGGGAAGAGCTTCCGCCTCAACTCACACCTCATCTCTCACCGCCGGATCCA
CCTGCAGCCAGCCAGCCAGCAGCCCATGAAGAAGAGTGAGGAAGAAGCTCTGGAAACAGAGGGCACGGGT
GCCAGCGACCTGCTGGAGAAGAGCAAAGCCAAGCTGAGCTTCCAGTGTGGGGACTGTGAGAAGAGCTTCC
AGCGGCATGACCATCTGGTGAGACACCGTAGACACTGTCATCTAAAGGATGAGACCCGTCCCTTCCAGTG
TCGGTACTGTGTCAAAACTTTCCGACAGAATTATGACCTCCTCCGCCATGAGCGCCTGCACATGAAGCGA
CGCTCCAAGCAGGCTCTCAACTCATACTGA

Translation (429 aa):
MSAESQSYPDAPPGALVQGTGLLSRSPGQPSEDLVPQDAFVVQEQSIRDAQPVATCQLPPNRVSPFKDMI
LCFSEEDWSLLDPAQTGFYGEFIIGEDYAVSMPPNEPPVQPGHSHEEENGLRVTEWTTDLQDKEIPQASC
LDLSSLQPFQGEERRKWEELQVPELQPCPQVVLSQSPCPAGGDPPALKSSLDQEVTIEIVLSSSGDEDSQ
HSPYCTEELRSPPEDLHSVPAHQSNASAEGEVQTSQKSYVCPNCGKIFRWRVNFIRHLRSRREQKPHKCS
VCGELFSDSEDLDGHLETHEAQKPYRCTACGKSFRLNSHLISHRRIHLQPASQQPMKKSEEEALETEGTG
ASDLLEKSKAKLSFQCGDCEKSFQRHDHLVRHRRHCHLKDETRPFQCRYCVKTFRQNYDLLRHERLHMKR
RSKQALNSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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