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Report for CCDS16624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16624.1 Public Mus musculus 2 Haus2 23 108 98 CCDS HistoryNCBI Gene:66296Re-query CCDS DB by CCDS ID:16624.1Re-query CCDS DB by GeneID:66296See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124187.7 ENSMUSP00000117299.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124187.7Link to Ensembl Protein Viewer:ENSMUSP00000117299.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124187Re-query CCDS DB by Protein ID:ENSMUSP00000117299
Original member Current member NCBI NM_025475.3 NP_079751.1 Accepted alive Link to Nucleotide Sequence:NM_025475.3Link to Protein Sequence:NP_079751.1Re-query CCDS DB by Nucleotide ID:NM_025475Re-query CCDS DB by Protein ID:NP_079751Link to BLAST:NP_079751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079751.1 234 Q9CQS9-1 234 100% 0 0

Chromosomal Locations for CCDS 16624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120609453 120609545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120612338 120612430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120613051 120613120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120615855 120615987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120617873 120617981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120618975 120619181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCGGCCGCCAACCCGTGGGACCCAGCGTCCTCGCAGACTGCAGCTGGGTTACTGCTAAACCACTTGG
TAGCTTCGGGCATAGTCACTAAGGAGATGTTAGATGTATCTAAGAAAATGGCTCCTTGCTTTGTGAACTT
TTCCAGATTACAACAGATCTCAGATATTCAAGCTGAAATCTACCAGAACAATCTGGAACTTGAACTTTTG
AAGCTAGAAAAGGATACAGCAGATCTTATTCATCCTTCCCATTTGATTGAGAAATGTGATGTTCTGCAAA
GCATGAATAATCATCTGGAAGCAGTGCTAAAAGAGAAGCATGCCATCAGGCAAAGACTGCTGAGACCCAT
GTGCCAGGAGAACTTGCCATTGGAAGCTGTTTATCACAGATATGTGGTACATATGTTGGATCTGGCTGTG
ACTTTCATTGAGAAATTTGAAACCCATCTTGAAACAGTTAAAAATAGCCCTCATTTAGACGCAAACCTAA
AGCAAATGAGCAAAGCTTTAGCCAAGATGGATATTTTGGTGAACAAGACAGAAGAACTGGCAGAGAATAT
ACTCAAGTGGCGAGAACTACAAACAGAAATTTCCTTGTATATCCCCAAAATGCTAACTGAAGAACGCCAT
CTTCATGAACTTGACATAGTGCCTCCTTTACCTTTTTTTCCTAAGGCTCACACCGAAACCTCCAGGGCCA
AGTGA

Translation (234 aa):
MAAANPWDPASSQTAAGLLLNHLVASGIVTKEMLDVSKKMAPCFVNFSRLQQISDIQAEIYQNNLELELL
KLEKDTADLIHPSHLIEKCDVLQSMNNHLEAVLKEKHAIRQRLLRPMCQENLPLEAVYHRYVVHMLDLAV
TFIEKFETHLETVKNSPHLDANLKQMSKALAKMDILVNKTEELAENILKWRELQTEISLYIPKMLTEERH
LHELDIVPPLPFFPKAHTETSRAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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