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Report for CCDS39850.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39850.2 Public Mus musculus 7 Map3k10 23 108 98 CCDS HistoryNCBI Gene:269881Re-query CCDS DB by CCDS ID:39850.2Re-query CCDS DB by GeneID:269881See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 39850.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39850.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036453.13 ENSMUSP00000037725.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036453.13Link to Ensembl Protein Viewer:ENSMUSP00000037725.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036453Re-query CCDS DB by Protein ID:ENSMUSP00000037725
Original member Current member NCBI NM_001290528.1 NP_001277457.1 Accepted alive Link to Nucleotide Sequence:NM_001290528.1Link to Protein Sequence:NP_001277457.1Re-query CCDS DB by Nucleotide ID:NM_001290528Re-query CCDS DB by Protein ID:NP_001277457Link to BLAST:NP_001277457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277457.1 940 Q66L42 940 100% 0 0

Chromosomal Locations for CCDS 39850.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27656664 27656986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27657852 27658532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27658830 27658942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27659021 27659174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27661535 27661651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27663225 27663471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27664398 27664573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27664950 27665098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27668349 27668529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27673343 27674024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2823 nt):
ATGGAGGAGGAGGAGGGGGCGGCGGCCAGAGAGTGGGGCGCGACCCCCGCGGGGCCAGTGTGGACCGCCG
TGTTCGACTACGAGGCGGTGGGCGACGAGGAGCTGACCCTGCGGAGAGGCGACCGCGTCCAGGTGCTTTC
CCAGGACTGTGCGGTGTCTGGAGATGAGGGCTGGTGGACAGGGCAGCTGCCCAGCGGCCGTGTGGGCGTC
TTCCCCAGCAACTACGTGGCCCCCGCTGCACCCGCCGCACCCTCAGACCTCCAGCTGCCACAGGAGATCC
CCTTCCACGAGCTGCAGCTGGAGGAGATCATCGGTGTCGGGGGCTTTGGCAAAGTCTATCGCGCCGTATG
GCGTGGAGAGGAAGTAGCGGTCAAGGCCGCTCGGCTGGACCCTGAACGGGACCCGGCAGTGACAGCGGAG
CAGGTCCGCCAGGAGGCCCGGCTCTTTGGAGCCCTGCAGCACCCCAACATCATTGCCCTGAGGGGCGCCT
GCCTCAGCCCCCCAAACCTCTGCCTGGTGATGGAATATGCTCGGGGAGGTGCATTGAGCAGGGTACTGGC
AGGTCGCCGGGTCCCCCCTCATGTGCTGGTCAACTGGGCTGTGCAGGTGGCTCGGGGCATGAACTATCTA
CACAATGATGCCCCTGTGCCCATCATTCACCGGGACCTCAAGTCCATCAACATCCTAATCCTGGAGGCCA
TTGAGAACCACAACCTCGCTGACACGGTGCTCAAGATCACAGACTTCGGCCTTGCCCGAGAGTGGCACAA
GACGACCAAAATGAGTGCAGCGGGGACCTACGCCTGGATGGCTCCTGAGGTTATCCGCCTGTCCCTCTTC
TCCAAAAGCAGCGACGTCTGGAGCTTCGGGGTTCTTCTTTGGGAGCTGCTGACCGGGGAGGTCCCCTACC
GAGAAATCGACGCCTTGGCCGTGGCTTACGGTGTGGCTATGAACAAGCTGACGCTACCCATCCCCTCCAC
GTGCCCCGAGCCCTTTGCCCGCCTACTGGAGGAATGCTGGGACCCAGACCCTCACGGGCGACCAGATTTT
GGCAGCATCCTGAAGCAGCTGGAGGTCATCGAGCAGTCAGCCCTGTTCCAGATGCCACTGGAGTCCTTCC
ACTCCCTGCAGGAAGACTGGAAGCTGGAGATTCAGCATATGTTTGATGACCTTCGGACCAAGGAGAAGGA
GTTGCGCAGCCGGGAAGAGGAGCTATTGCGGGCTGCACAGGAGCAGCGTTTTCAGGAAGAGCAGCTACGG
CGTCGGGAGCAGGAGCTGGCAGAGCGAGAGATGGACATCGTAGAACGTGAGCTGCACCTGCTCATGAGCC
AGCTGAGCCAGGAGAAGCCCAGGGTCCGAAAACGCAAGGGCAACTTCAAGCGCAGCCGCTTGCTCAAGCT
ACGGGAAGGAAGCAGCCACATCAGCCTGCCCTCTGGATTTGAACATAAGATCACCGTCCAGGCCTCCCCA
ACCCTGGACAAGAGGAAAGGATCCGATGGGGCCAGCCCTCCTGCCAGCCCCAGCATCATTCCCCGGTTGA
GGGCCATTCGATTGACTCCCATGGACTGTGGTGGCAGCAGTGGTAGTGGAACATGGAGCCGCAGTGGGCC
ACCAAAGAAGGAAGAACTGGTTGGGGGCAAGAAGAAAGGCAGGACATGGGGCCCCAGTTCCACTTTGCAG
AAGGAGCGAGCTGGAGGAGAGGAGAGGCTCAAGGCCCTGGGGGAAGGAAGCAAGCAGTGGTCCTCGAGCG
CCCCCAACCTGGGCAAATCCCCTAAGCACACCCCCATGGCCCCAGGCTTCGCCAGCCTCAACGAGATGGA
AGAATTTGCGGAGGCAGATGAAGGCAACAACGTGCCCCCTTCTCCCTACTCCACCCCGTCCTACCTCAAG
GTGCCTCTGCCCGCCGAGCCTTCTCCTTGTGTTCAGGCGCCTTGGGAGCCGCCGGCTGTCACCCCTTCCC
GGCCAGGACACGGAGCTCGTAGGCGCTGCGACCTGGCGCTGCTAAGCTGTGCCACGCTGCTGAGTGCGGT
GGGCCTGGGCGCCGACGTGGCCGAGGCACGGGCCGGGGACGGTGAGGAGCAGCGGCGCTGGCTGGACAGT
CTCTTCTTCCCGCGCCCCGGCCGCTTCCCTCGCGGTCTCAGCCCAACCGGGCGCCCCGGAGGTCGCCGCG
AAGACACAGCCCCAGGCTTGGGTCTGGCACCCTCGGCCACCCTGGTGTCATTATCCTCTGTATCGGATTG
TAACTCTACGCGCTCATTGCTGCGCTCTGACAGTGACGAGGCTGCCCCTGCCGCCCCCTCCCCGCCGCCT
TCTCCGCTCGCGCCCTCACCCAGCACCAATCCTCTCGTGGACGTGGAGTTGGAGAGCTTCAAGAAGGACC
CCCGGCAGTCACTTACGCCCACCCACGTCACTGCCGCCCACGCTGTGAGCCGTGGACACAGGCGGACGCC
ATCAGATGGGGCTTTGAGACAACGGGAGCCTCTGGAGCTCACCAACCACGGTCCTCGAGACCCCCTGGAC
TTCCCTCGACTGCCCGACCCCCAGGCCCTGTTCCCTACCCGACGCCGGCCCCTGGAGTTCCCTGGCCGCC
CCACCACCCTCACTTTTGCCCCAAGACCCCGGCCTGCTGCCAGCCGCCCCCGTCTGGATCCCTGGAAACT
GGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCAAGCAGGCCAGACACTCCAGAGAGCCCTGGGCCC
CCCAGCGTGCAACCCACGTTGCTGGACATGGACATGGAGGGCCAGAGCCAGGACAATACAGTGCCCCTAT
GTGGGGTCTATGGCTCTCACTGA

Translation (940 aa):
MEEEEGAAAREWGATPAGPVWTAVFDYEAVGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGV
FPSNYVAPAAPAAPSDLQLPQEIPFHELQLEEIIGVGGFGKVYRAVWRGEEVAVKAARLDPERDPAVTAE
QVRQEARLFGALQHPNIIALRGACLSPPNLCLVMEYARGGALSRVLAGRRVPPHVLVNWAVQVARGMNYL
HNDAPVPIIHRDLKSINILILEAIENHNLADTVLKITDFGLAREWHKTTKMSAAGTYAWMAPEVIRLSLF
SKSSDVWSFGVLLWELLTGEVPYREIDALAVAYGVAMNKLTLPIPSTCPEPFARLLEECWDPDPHGRPDF
GSILKQLEVIEQSALFQMPLESFHSLQEDWKLEIQHMFDDLRTKEKELRSREEELLRAAQEQRFQEEQLR
RREQELAEREMDIVERELHLLMSQLSQEKPRVRKRKGNFKRSRLLKLREGSSHISLPSGFEHKITVQASP
TLDKRKGSDGASPPASPSIIPRLRAIRLTPMDCGGSSGSGTWSRSGPPKKEELVGGKKKGRTWGPSSTLQ
KERAGGEERLKALGEGSKQWSSSAPNLGKSPKHTPMAPGFASLNEMEEFAEADEGNNVPPSPYSTPSYLK
VPLPAEPSPCVQAPWEPPAVTPSRPGHGARRRCDLALLSCATLLSAVGLGADVAEARAGDGEEQRRWLDS
LFFPRPGRFPRGLSPTGRPGGRREDTAPGLGLAPSATLVSLSSVSDCNSTRSLLRSDSDEAAPAAPSPPP
SPLAPSPSTNPLVDVELESFKKDPRQSLTPTHVTAAHAVSRGHRRTPSDGALRQREPLELTNHGPRDPLD
FPRLPDPQALFPTRRRPLEFPGRPTTLTFAPRPRPAASRPRLDPWKLVSFGRTLSISPPSRPDTPESPGP
PSVQPTLLDMDMEGQSQDNTVPLCGVYGSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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