NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71030.1 Public Mus musculus 2 Ttc16 23 108 98 CCDS HistoryNCBI Gene:338348Re-query CCDS DB by CCDS ID:71030.1Re-query CCDS DB by GeneID:338348See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066478.8 ENSMUSP00000068977.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066478.8Link to Ensembl Protein Viewer:ENSMUSP00000068977.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000066478Re-query CCDS DB by Protein ID:ENSMUSP00000068977
Original member Current member EBI ENSMUST00000161950.7 ENSMUSP00000123927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161950.7Link to Ensembl Protein Viewer:ENSMUSP00000123927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161950Re-query CCDS DB by Protein ID:ENSMUSP00000123927
Original member Current member EBI ENSMUST00000161089.7 ENSMUSP00000124915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161089.7Link to Ensembl Protein Viewer:ENSMUSP00000124915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161089Re-query CCDS DB by Protein ID:ENSMUSP00000124915
Original member Current member NCBI NM_001290564.1 NP_001277493.1 Accepted alive Link to Nucleotide Sequence:NM_001290564.1Link to Protein Sequence:NP_001277493.1Re-query CCDS DB by Nucleotide ID:NM_001290564Re-query CCDS DB by Protein ID:NP_001277493Link to BLAST:NP_001277493.1
Original member Current member NCBI NM_001290566.1 NP_001277495.1 Accepted alive Link to Nucleotide Sequence:NM_001290566.1Link to Protein Sequence:NP_001277495.1Re-query CCDS DB by Nucleotide ID:NM_001290566Re-query CCDS DB by Protein ID:NP_001277495Link to BLAST:NP_001277495.1
Original member Current member NCBI NM_001290567.1 NP_001277496.1 Accepted alive Link to Nucleotide Sequence:NM_001290567.1Link to Protein Sequence:NP_001277496.1Re-query CCDS DB by Nucleotide ID:NM_001290567Re-query CCDS DB by Protein ID:NP_001277496Link to BLAST:NP_001277496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277493.1 767 Q8C1F5 767 99.7392% 0 2
NP_001277495.1 767 Q8C1F5 767 99.7392% 0 2
NP_001277496.1 767 Q8C1F5 767 99.7392% 0 2

Chromosomal Locations for CCDS 71030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32762341 32763005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32764893 32764968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32767178 32767301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32767473 32767615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32767937 32768102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32768842 32768983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32769098 32769342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32770052 32770266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32771889 32772018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32772110 32772210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32773665 32773808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32773982 32774072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32774391 32774452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGACAGATCCTACAAAACGAAGGATGATAGGATCAACAGTGCCTGCCAAAGTCAGAGAGTACTATAACC
AAGGCCATCAGTGCCTCCTACAAGAGGACTGGGAGATGTCTGTGCTGTTCTTCTCCCGTGCCCTCCACCT
GGACCCCAAACTGGTAGACTTCTATGTATTCCGTGCTGAGGCCTTCATCCAACTCTGTGACTTCTCCTCT
GCCCTCCAGAACCTCCGCAGGGCCTACTCCTATGACCCAGGGAATAACAAGTACCTGAACCGGCTGGCCT
TTGTGCTCTACCTACAGGGTCAGTGCCTGTATGAGCTGTGTGACTTCCAGGAAGCCCTCTGTGTCTTCCT
GCAAGCCTCCGACCTCCAGCCCCAAAACGCTTCCTTCAGTTACCGATGCATGGCCTGCCTGCTGGCCCTC
AAGCGGTATCACGACTGCCTCGCCCTCATCACTAGGGAGGTGAAGCAGGGCAGGGCCAGCGCTGATGTCT
ACATCCTCCGGGCTCGGCTCTACAACTTCTTCCAGAAGGCCAAGCTCTGCTATCAGGACCTTCGAAGCGC
CTTGCTCCTAGATCCCTTGCACGCACAGGCCAAAGGGCTACTCCAGAAGATGGTGGACCAGGCCAAGCAG
TCTCTCCAAGATGCCAGCACCCTGGCCGTGCAGGGCAAGGTGCACCGTGCACTGAAGTGCATCAACTGTG
CCATTGAGAACAATCCCCTGGATCCCAACTTCTTCTTCTTCCGGGGCACCTTGCGTAGACGGCTCCAGCA
ATTTGACCATGCTGTGGAAGACTTCCTGAAGGCAATGGACATGGTGACTGACACCCAGGACAACCTAGTG
AAGCAGGCGCAGCGTCAGCTGCTGCTGACTTACAATGACTTTGCTGTGCACTGCTACAACCATGGTGCCT
ATCAGGAGGGCGTGCTGCTGCTGAACAAGGCTATCAGAGACGAGCAGAATGAGAAGGGCTTGTACATCAA
CCGTGGGGATTGCTTCTTCCAGCTGGGCAACCTGGCCTTCGCGGAGGCTGACTACAAGCAAGCGCTGGCC
CTGAGCCCGCTGGATGAAGGAGCCAACTTGCGCATGGGTGTGCTGCAGGAGAAGCTGGGCTTCTGCCAGC
AGAAACACAGGCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCCATAAGGCACAGCCCTCAGAAACC
ACAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACACTCTGGGGGCCCGCCTGGATGTC
GCTACTGTACTGCTTCTCAATCCCGAGTATCCCAAGATGGCTGCAGTGATGAACACCCTCTTTCCTAGCA
TGACTGTGGAGAATGTGCTTAAGTCCCAAGTGGCCGAACTGGCCAAGCTCCAGCTAAGTCGGATGATAGA
AAATGGGCCGAAGAACATCTACCCTCAGAGCACTGTGGTGCAGCGGTTATTGGAACGCAGGAAAGCCCAA
GTCCTGGTGAAGCTCTGGAAGCAGGAACGTCTTGGGACCCCTGAAGAGGAAGTGACTCTTTACCAGGCTC
CGCAGCTGGCAGAGGAAAAAAAGGTGAAAACCGCTCGCAGAAGGACATCCCTGACAGACAGCTATGCGGA
CCAGACCTCCTCAGGCTCCGTCTTTAGCATTGTGAGCATCAGCACGTCGGGGCCAGAGATGTCAACCAGT
CAGGAGTATAAGAGCTCTTCCCACACGGCTATAGAATCCTCTGAGTCCACACTGCTAAAGCCTCAGCTCT
CAGTACCCAGGAAGAGCCAGGAACTGACCTGGAGCCCCAAGGTCGTCCAGGCAGTCACAGAGAACCTAAT
CCAGAACGCCACTGAGGTCACACCTGCCTATGGCCAAAGGGACTCCAAAAAGGCCACCCAAGTCCCAAAG
CCCAAGAAGACAGAGGATCCCAAGGATCCTAGCCAGAGCACCAGCACGACAGAAGCCCCTGAGGGCCCAA
GGCCTAGCAAGTCCAGGTCTACCCTGAGCGTAAAGGAGAGAATCAGAAGAGCTAAGGCTGTTCGCGCCCA
GGGCTGGAAACTCAAGGCCCAGCGCAGCAGCCAGAAAGTAACAAAGACTCCCAGCCTGACCCACAGCACG
ACCCATAGTGACATTGGTGAGAGTGCCAATGATACCCCGGGCCAGACTCCATGGCCCAGCAAGGCTGCTG
ATAGCTTAAGCTTCAGTGAGATCTCGTCAACAGATCTCAGCAGTAGTGAAAGCTTCTTGGAACTGACTAA
CCTTTTAACTCAGGAAGTCCAACAGATCCCAGGAGACAGAGAGAAGCTCACCTCTGACGATTAA

Translation (767 aa):
MTDPTKRRMIGSTVPAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSS
ALQNLRRAYSYDPGNNKYLNRLAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLAL
KRYHDCLALITREVKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQKMVDQAKQ
SLQDASTLAVQGKVHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLV
KQAQRQLLLTYNDFAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALA
LSPLDEGANLRMGVLQEKLGFCQQKHRQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDV
ATVLLLNPEYPKMAAVMNTLFPSMTVENVLKSQVAELAKLQLSRMIENGPKNIYPQSTVVQRLLERRKAQ
VLVKLWKQERLGTPEEEVTLYQAPQLAEEKKVKTARRRTSLTDSYADQTSSGSVFSIVSISTSGPEMSTS
QEYKSSSHTAIESSESTLLKPQLSVPRKSQELTWSPKVVQAVTENLIQNATEVTPAYGQRDSKKATQVPK
PKKTEDPKDPSQSTSTTEAPEGPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTPSLTHST
THSDIGESANDTPGQTPWPSKAADSLSFSEISSTDLSSSESFLELTNLLTQEVQQIPGDREKLTSDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH