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Report for CCDS71381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71381.1 Public Mus musculus 4 Tdrd7 23 108 98 CCDS HistoryNCBI Gene:100121Re-query CCDS DB by CCDS ID:71381.1Re-query CCDS DB by GeneID:100121See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107777.8 ENSMUSP00000103406.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107777.8Link to Ensembl Protein Viewer:ENSMUSP00000103406.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107777Re-query CCDS DB by Protein ID:ENSMUSP00000103406
Original member Current member NCBI NM_001290475.1 NP_001277404.1 Accepted alive Link to Nucleotide Sequence:NM_001290475.1Link to Protein Sequence:NP_001277404.1Re-query CCDS DB by Nucleotide ID:NM_001290475Re-query CCDS DB by Protein ID:NP_001277404Link to BLAST:NP_001277404.1

Chromosomal Locations for CCDS 71381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45965384 45965476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45987462 45987674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45989078 45989219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45990050 45990230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45992197 45992270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45994307 45994524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46005117 46005700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46007455 46007641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46010790 46010901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46013066 46013268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46016869 46017003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46018530 46018616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46020805 46020939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46023395 46023505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46025657 46026159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46029647 46029807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46034296 46034516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3360 nt):
ATGAGGAGCCAGCAGTCTACAACCCAGAGGAGGGTCCTCAGCAGAACCGGACCAAGCTGGCACCCGGATC
CTGGACTTTCAGCCTCCAGAACCGCAAAGATGCTGGAGGCAGATCTGGTTTCAAAGATGCTAAGGGCTGT
CCTGCAGTCTCATAAGAACGGGATCGTATTACCCCGTCTCCAAGGAGAGTACCGATCTTTGACTGGAGAC
TGGATCCCCTTCAAGCAGCTGGGCTACCCTACTTTGGAAGCCTACCTGAGAAGCGTGCCAGCAGTTGTCA
GGATAGAGGCTAGTAGATCTGGAGAGATCGTCTGCTATGCAGTAGCCTGCACAGAAACTGCAAGGATCGC
TCAGCTTGTGGCTCGTCAGAGGACCTCTAAAAGGAAAATAGGGCGACAAATTAATTGTCAGATGAGAGTG
AAGAAAGCCATGCCGTTCTTTCTAGAAGGAAAGCCAAAGGCAACTCTCAGACAACCAGGATTTGCCTCAG
ATTATTCCATCAGCAGGAAACCTAATTCAGCGCTGTTAAGAGACAGAGGAAGCGCCTTGGGAGTTAAGGC
TGACGTGGACATGCCGCCGTACCCAGACACTCCAGTGCAGAGGCACGCGAGCATGTCTGCCAATAGCAGG
TTCAGTCCAAAGTCATCCTTGCCAGCGTCTTTCCAGACACACATCTCAAGGGCCTGCCCTACGGAAGTCA
ATGATAATTTAAATCAGACTGTTGAGAAACCAAATATCACGCCTCCTGCCTCTTACACTAATAAGATGGA
TGAGGTTCAAAACCGCATAAAGGAAATATTAGACAAGCATAACAATGGCATTTGGATATCTAAGCTTCCA
CATTTTTACAAAGAGTTTTATAAAGAAGACCTTAACCAAGGAGTTTTACAGCAGTTTGAACACTGGCCTC
ACATTTGCACGGTGGAAAAACCTTGTGGTGGTGGTCAAGATTCACTTCTTTATCCTGCCAGGAGAGAGCA
GCCCCTGAAAAGTGACCAGGACCCTGAGAAGGAGCTCCCACCTCCACCTCCTGCTCCCAAGCAGGAGGTT
CCATCCCAAGGGAGCCCAGCAGTGATGCCAGATGTCAAGGAGAAAGTGGCAGAACTGCTGGGCAAGTACT
CAAGTGGCCTTTGGGCAAGTGCGCTCCCCAAAGCATTTGAGGACATGTACAAAGTCAAGTTCCCTGAGGA
TGCCTTAAAAAATCTCGCCTCGCTCTCTGATGTGTGCACCATAAACTACATTTCTGGAAACACCCAGAAG
GCAATTCTCTATGCGAAACTCCCATTGCCCACTGACAAGATCTTAAAGGATGAAGGGCAGGCACAAGGAG
ATTTTGACATCAAGTCGATGATTGAACAAGAGTATTTGCAGATAGAAAAAAACATGGCTGAAAGTGCTGA
TGAGTTTCTGGAGGACATAACTGTGCCGCCTCTGGTAATTCCTACCGAGGCCTCACCGTCTGTGTTGGTG
GTTGAGCTGAGCAACACAAATGATGTGGTTATCAGGTATGTAGGCAAAGACTACTCAGCTGCTCAGGAAC
TGATGGAGGATGAGATGAAGGAGTTTTACAGTAAGAACCCCAGAGTCACACCGATCCAGACTGTGCACGT
GGGGCAGCTGCTGGCAGTCAATGCAGAGGAGGATGCCTGGTTGCGAGCACAGATCATTTCCACGGATGAG
AACAAGATAAAGGTGTGCTATGTTGACTATGGCTTTTGTGAAAACATTGAGAAGAGTAAAGCGTACAGAC
TGAACCCACGGTTCTGCTCGCTTTCCTTTCAAGCCACCAAGTGCAAGCTGGCAGGGTTGGAGGTTCTGAA
TGATGACCCTGACCTTGTGAAGGCGGTGGAATCACTAACATGTGGGAAGATCTTTGCTGTGGAGATCCTG
GACAAGTCAGATGTCCCGCTGGTGGTGCTGTACGACACGTCAGGAGAGGACGATATCAACATCAATGCCA
CCTGCCTCAAGGCAATATGTGACAGATCTCTACAAGTTCATCTCCAGGTGGATGCCATGTACACAAATGT
CAAAGTGACCAACATTTGCTCTGATGGAACACTCTACTGCCAGGTGCCCTGCAAGGGTCTGAATAAACTC
AATGACCTTCTGCATAAGACAGAGGACTACTTCCACTGCAAGCACATGACCTCTGAGTACTTCATCTCGC
TACCCTTCTGTGGGAAGATCTGCCTCTTCCATTGCAAAGGGAAATGGTTACGAGTGGAGATCACTAATGT
TCATAGCAGCCGTGCACTCGACGTTCAGTTCCTGGACTCTGGCAATTCGACATCCGTGAAAGTGTCAGAA
CTCAGAGAAATCCCACCGCGGTTCCTGCAGGAAATGCTTGCCATACCCCCTCAGGCTATAAAGTGCTGCT
TGGCTGATCTTCCACAGTCCATTGGCATGTGGACACCAGATGCTGTTCTGTGGTTAAGAGATTCTGTTTT
GAATTGCTCGGACTGTAGTATTAAGGTTACAAAAATGGATGAGACCAAGGGGGTTGCCTATGTGTACTTA
TTCACTCCCAATAACTTCCCGGATCCCCATCGCAGTATTAACCGGCAGATCACAAACGCAGACCTGTGGA
AACATCAGAAGGATGTGTTTCTGAGCGCGGTGTCTACTGCGGCCAGTTCCCCTGGCAACAGGAATGGTGG
CACACCTGCTCCGGGCAGCCCTGCAGAGAGTCTCAGAAAGAGCCACCCAGAGGTTATCAAGAAGTCTGTC
CTGGACCATACCAGCTCTTTCTCCTTGGAGGAACTGCCCCCTCCTGTCCACCTGTCAAGGTCAGGGGAAC
ACATGGATGTGTATGTGCCTGTGGCCTGTCACCCAGGCCATTTTGTCATCCAGCCCTGGCAGGAGATCCA
TAAGCTAGAAGTGCTGATGGAAGAGATGATCCTGTACTACAGCGTGTCCGAGGAGCGCCACATAGCGGTG
GAGCGAGACCAAGTGTACGCAGCCAAAGTGGAGAATAAGTGGTACAGGGTACTTTTAAAAGGAATCCTGA
CCAATGGGCTGGTGTCTGTGTACGAGCTGGACTACGGCAAGCATGAGCTCGTCAACATAAGGAAAGTGCA
GCCCCTAGTGGACGTGTTCCGAAAGCTGCCCTTCCAGGCGGTCACCGCTCAACTGGCAGGCGTGAAGTGC
AGCCAGTGGTCGGAGGAGGCTTCGATGGTGTTTCGAAATCACGTGGAGAAGAAAGCCCTGGTGGCGTTGG
TGCAGACAGTTGTTGAGCACACTAATCCTTGGGACCGGAAAGTGGTGCTCTATCTCGTAGACACGTCGCT
GCCCGACACTGACACCTGGATTCATGACTTTATGTCACAGTATCTGCTAGAGCTTTCGAAAGTTAATTAA

Translation (1119 aa):
MRSQQSTTQRRVLSRTGPSWHPDPGLSASRTAKMLEADLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGD
WIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVCYAVACTETARIAQLVARQRTSKRKIGRQINCQMRV
KKAMPFFLEGKPKATLRQPGFASDYSISRKPNSALLRDRGSALGVKADVDMPPYPDTPVQRHASMSANSR
FSPKSSLPASFQTHISRACPTEVNDNLNQTVEKPNITPPASYTNKMDEVQNRIKEILDKHNNGIWISKLP
HFYKEFYKEDLNQGVLQQFEHWPHICTVEKPCGGGQDSLLYPARREQPLKSDQDPEKELPPPPPAPKQEV
PSQGSPAVMPDVKEKVAELLGKYSSGLWASALPKAFEDMYKVKFPEDALKNLASLSDVCTINYISGNTQK
AILYAKLPLPTDKILKDEGQAQGDFDIKSMIEQEYLQIEKNMAESADEFLEDITVPPLVIPTEASPSVLV
VELSNTNDVVIRYVGKDYSAAQELMEDEMKEFYSKNPRVTPIQTVHVGQLLAVNAEEDAWLRAQIISTDE
NKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGLEVLNDDPDLVKAVESLTCGKIFAVEIL
DKSDVPLVVLYDTSGEDDININATCLKAICDRSLQVHLQVDAMYTNVKVTNICSDGTLYCQVPCKGLNKL
NDLLHKTEDYFHCKHMTSEYFISLPFCGKICLFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSE
LREIPPRFLQEMLAIPPQAIKCCLADLPQSIGMWTPDAVLWLRDSVLNCSDCSIKVTKMDETKGVAYVYL
FTPNNFPDPHRSINRQITNADLWKHQKDVFLSAVSTAASSPGNRNGGTPAPGSPAESLRKSHPEVIKKSV
LDHTSSFSLEELPPPVHLSRSGEHMDVYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAV
ERDQVYAAKVENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVKC
SQWSEEASMVFRNHVEKKALVALVQTVVEHTNPWDRKVVLYLVDTSLPDTDTWIHDFMSQYLLELSKVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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