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Report for CCDS72422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72422.1 Public Mus musculus X Hdx 23 108 98 CCDS HistoryNCBI Gene:245596Re-query CCDS DB by CCDS ID:72422.1Re-query CCDS DB by GeneID:245596See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038472.6 ENSMUSP00000043482.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038472.6Link to Ensembl Protein Viewer:ENSMUSP00000043482.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038472Re-query CCDS DB by Protein ID:ENSMUSP00000043482
Original member Current member NCBI NM_001290459.1 NP_001277388.1 Accepted alive Link to Nucleotide Sequence:NM_001290459.1Link to Protein Sequence:NP_001277388.1Re-query CCDS DB by Nucleotide ID:NM_001290459Re-query CCDS DB by Protein ID:NP_001277388Link to BLAST:NP_001277388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277388.1 634 Q14B70-2 634 100% 0 0

Chromosomal Locations for CCDS 72422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 111577273 111577398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111582795 111582917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111589195 111589278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111592961 111593040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111600618 111600825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111622301 111622447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111649837 111649890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111659634 111660716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGAGTAGTAAAAGCTGTGAATCAGGAGCAGCAGGAACTGTGTCTGGTACCTCATTGGCAGCGCCAGACA
TTACAGTCAGAAATGTGGTTAATATTGCCCGCCCTTCAAGCCAGCAATCTTCTTGGACTTCTGCCAATAA
TGATGTCATTGTAACTGGTATATACAGTCCAGTAAGCTCATCAAGTAAGCAAGGCACTACAAAGCATACA
AATACACAAATTACAGAAGCACATAAAATTCCTATTCAGAAGGCAGCCAATAAAAATGACACTGAATTAC
AATTGCACATTCCTGTTCAAAGACAAGTAGCGCACTGTAAGAATGCTTCTGTGCTCCTAGGGGAAAAGAC
AATTATTTTGTCAAGACAGACAAGTGTACTAAATGCTGGAAACTCAGTGTACAATCACACAAAGAAAAGC
TATGGAAGTTCTCCGGTGCAAGCTTCAGAAATGACAGTACCTCAAAAGCCATCTGTGTGCCAGCGACCTT
GCAAAATTGAACCAGTTGGGATTCAAAGGTCATATAAACCTGAACATGCAGGTCTGGCATCACATAACTT
ATGTGGGCAAAAGCCAACCATTAGAGACCCTTGCTGTAGAACACAAAACTTGGAAATTCGTGAAGTGTTT
TCATTGGCAGTCAGTGATTACCCTCAGAGAATTCTGGGAGGAAATAGCACACAGAAGCCGGCCTCAGCAG
AAGGAACTTGTTTGTCCATTGCAATGGAGACTGGAGACGCAGAGGATGAATATGCCAGAGAAGAAGAACT
GGCATCAATGGGAGCACAAATAACAAGCTACTCAAGGTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAG
AACCAAAGTACAAATTTGCCTGGACCAGGAAGAAACCTGCCAAATTCACAAATGGTGAATATTAGAGATT
TGTCAGACAATGTACTGTATCAGACTAGAGACTACCATTTGACACCACGGACCTCATTGCATACAGCATC
TAGTACTATGTACAGTAATACTAATCCATCACGGAGTAATTTTTCTCCACATTTTGTATCATCAAACCAA
CTGAGGTTATCACAAAACCAAAACAATTACCAGATTTCAGGAAACCTTTCTGTGCCTTGGATTACAGGGT
GTTCTAGGAAAAGAGCACTACAGGACCGCACTCAATTCAGTGACCGAGACTTGGCTACTCTTAAGAAGTA
CTGGGACAATGGTATGACCAGCCTGGGCTCTGTATGTAGAGAGAAGATTGAAGCTGTTGCAATTGAATTA
AATGTCGACTGTGAAATAGTTCGGACTTGGATTGGGAATCGAAGAAGAAAATACCGTTTAATGGGAATTG
AAGTTCCACCTCCAAGAGGAGGCCCTGCTGATTTCTCTGAGCAGCCTGAGTCTGGTTCTTTGTCTGCACT
CACACCAGGAGAGGAAGCTGGGCCTGAAGTAGGAGAGGATAATGACAGAAATGATGAAGTGTCCATCTGT
TTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAACTTATCCCAAATGAGACCAGGGCACATAAGGATG
AAGAGCACCAGGCAGTATCTGCAGATAATGTGAAAATAGAAATTATCGATGATGAAGAAAGTGACATGAT
AAGCAATTCTGAGGTAGAACAAGAAAATTCTCTCCTGGATTACAAGAATGAAGAAGTCAGATTTATTGAA
AATGAGCTAGAGATTCAAAAGCAAAAATACTTTAAGCTCCAGTCTTTTGTTAGAAACCTGATTCTCGCTA
TGAAAGCTGATGATAAAGACCAGCAGCAGGCACTGCTGTCAGATTTACCTCCAGAATTAGAAGAGATGGA
TTGCAGTCATGCCTCGCCGGATCCTGATGATACCTCACTCAGTGTGTCTTCTTTATCAGAGAAAAATGCC
TCAGACAGCTTGTGA

Translation (634 aa):
MSSKSCESGAAGTVSGTSLAAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPVSSSSKQGTTKHT
NTQITEAHKIPIQKAANKNDTELQLHIPVQRQVAHCKNASVLLGEKTIILSRQTSVLNAGNSVYNHTKKS
YGSSPVQASEMTVPQKPSVCQRPCKIEPVGIQRSYKPEHAGLASHNLCGQKPTIRDPCCRTQNLEIREVF
SLAVSDYPQRILGGNSTQKPASAEGTCLSIAMETGDAEDEYAREEELASMGAQITSYSRFYESGNSLRAE
NQSTNLPGPGRNLPNSQMVNIRDLSDNVLYQTRDYHLTPRTSLHTASSTMYSNTNPSRSNFSPHFVSSNQ
LRLSQNQNNYQISGNLSVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVAIEL
NVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSIC
LSEASSQEESNELIPNETRAHKDEEHQAVSADNVKIEIIDDEESDMISNSEVEQENSLLDYKNEEVRFIE
NELEIQKQKYFKLQSFVRNLILAMKADDKDQQQALLSDLPPELEEMDCSHASPDPDDTSLSVSSLSEKNA
SDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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