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Report for CCDS51119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51119.1 Public Mus musculus 4 Esrp1 23 108 98 CCDS HistoryNCBI Gene:207920Re-query CCDS DB by CCDS ID:51119.1Re-query CCDS DB by GeneID:207920See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108311.8 ENSMUSP00000103947.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108311.8Link to Ensembl Protein Viewer:ENSMUSP00000103947.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108311Re-query CCDS DB by Protein ID:ENSMUSP00000103947
Original member Current member NCBI NM_194055.3 NP_918944.2 Accepted alive Link to Nucleotide Sequence:NM_194055.3Link to Protein Sequence:NP_918944.2Re-query CCDS DB by Nucleotide ID:NM_194055Re-query CCDS DB by Protein ID:NP_918944Link to BLAST:NP_918944.2

Chromosomal Locations for CCDS 51119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11338757 11338831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11344112 11344262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11353295 11353463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11357460 11357658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11359738 11359956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11360954 11361255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11365004 11365046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11365144 11365276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11365374 11365484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11366908 11366962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11367085 11367183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11379291 11379405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11384349 11384462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11385647 11385775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11386305 11386436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGACGGCGTCTCCGGATTACTTGGTGGTGCTTTTTGGGATCACTGCTGGGGCCACCGGAGCCAAGCTGG
GTTCGGATGAGAAGGAGCTGATCCTGCTGTTATGGAAAGTCGTGGATTTGGCCAACAAGAAGGTGGGACA
GCTGCACGAAGTACTAGTTAGACCGGATCAGTTGGAACTGACAGAGGATTGTAAAGAAGAAACTAAAATA
GACGCCGAAAACCTGTCTTCCGCGCCGCAGCTGGACCAAGCCCTCCGACAGTTTAACCAGTCAGTGAGCA
ATGAACTGAACATCGGGGTAGGGACTTCCTTCTGTCTCTGTACTGACGGGCAGCTTCACATTAGGCAGAT
CTTGCATCCCGAGGCTTCCAAGAAGAATGTGTTACTGCCTGAGTGCTTCTATTCCTTTTTCGATCTTCGG
AAAGAGTTCAAGAAGTGCTGCCCGGGCTCTCCCGATATCGACAAGCTGGATGTCGCAGCGATGACAGAAA
GCCTGAACTTTGAGAAGAGTGACTCTGTGTCCCGATACGGAGCCTCCCAAGTTGAAGACATGGGGAACAT
AATTTTAGCAATGATCTCCGAGCCCTACAATCACAGATTTTCAGATCCAGAGAGAGTAAACTACAAGTTT
GAAAGTGGCACTTGCAGCAAGATGGAACTTATTGATGACAGCACAGTGGTGAGAGCTCGAGGTTTGCCCT
GGCAATCTTCAGATCAAGATATTGCAAGGTTCTTCAAAGGACTCAATATTGCCAAGGGTGGCGCAGCACT
TTGCCTGAATGCTCAGGGCCGGAGGAACGGAGAAGCTCTGGTTAGATTTGTAAGTGAGGAGCACAGAGAT
CTAGCCCTGCAGAGGCACAAACATCACATGGGGACCCGGTACATTGAGGTTTACAAAGCAACAGGCGAAG
ATTTCCTTAAAATTGCCGGAGGGACATCCAATGAGGTAGCCCAGTTTCTCTCCAAGGAAAACCAAGTCAT
CGTGCGCATGAGGGGGCTCCCTTTCACGGCCACGGCTGAAGAAGTGGTGGCCTTCTTTGGACAGCACTGC
CCCATCACTGGAGGGAAGGAAGGCATCCTCTTCGTTACCTACCCAGATGGTAGGCCAACCGGAGATGCTT
TTGTGCTCTTTGCTTGTGAGGAGTATGCTCAGAACGCCCTGAGGAAGCACAAGGAGTTGCTGGGTAAAAG
ATACATCGAGCTCTTCAGGAGCACAGCTGCCGAAGTTCAGCAGGTGCTGAACCGATTCTCCTCAGCCCCT
CTGATTCCACTTCCAACCCCTCCCATTATCCCTGTACTACCTCAGCAGTTTGTGCCTCCCACGAATGTCA
GAGACTGCATACGTCTGCGAGGTCTTCCCTATGCTGCCACAATAGAAGACATTCTGGACTTCCTGGGGGA
GTTTTCCACAGATATTCGTACACATGGAGTGCACATGGTATTGAATCACCAGGGACGCCCGTCAGGAGAT
GCCTTTATCCAGATGAAGTCAACAGACAGAGCATTCATGGCTGCGCAGAAGTACCATAAAAAAACCATGA
AGGACAGATATGTTGAAGTCTTTCAGTGTTCAGCTGAGGAGATGAACTTTGTGTTAATGGGGGGCACTTT
AAATCGAAATGGCTTGTCCCCACCGCCATGTAAGTTACCATGCCTGTCTCCTCCCTCCTACACATTCCCA
GCTCCCACGGCTGTGATTCCTACCGAAGCTGCCATTTATCAACCTTCTCTGCTCTTGAACCCACGGGCAC
TGCAGCCCTCCACTGCATACTACCCGGCAGGCACTCAGCTCTTCATGAACTACACAGCCTACTATCCCAG
CCCCCCAGGTTCGCCTAATAGTCTTGGCTACTTCCCTACAGCTGCTAATCTTAGCAGTGTCCCGCCCCAG
CCTGGCACCGTGGTCAGAATGCAGGGCCTGGCCTACAATACTGGAGTTAAGGAAATTCTTAACTTCTTCC
AAGGTTACCAGTATGCAACCGAGGATGGACTTGTACACACAAATGACCAGGCCAGGACTCTACCCAAAGA
ATGGGTTTGTATTTAA

Translation (681 aa):
MTASPDYLVVLFGITAGATGAKLGSDEKELILLLWKVVDLANKKVGQLHEVLVRPDQLELTEDCKEETKI
DAENLSSAPQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHIRQILHPEASKKNVLLPECFYSFFDLR
KEFKKCCPGSPDIDKLDVAAMTESLNFEKSDSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKF
ESGTCSKMELIDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD
LALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHC
PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAP
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGD
AFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFP
APTAVIPTEAAIYQPSLLLNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLSSVPPQ
PGTVVRMQGLAYNTGVKEILNFFQGYQYATEDGLVHTNDQARTLPKEWVCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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