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Report for CCDS70972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70972.1 Public Mus musculus 2 Nmt2 23 108 98 CCDS HistoryNCBI Gene:18108Re-query CCDS DB by CCDS ID:70972.1Re-query CCDS DB by GeneID:18108See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091504.4 ENSMUSP00000089085.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091504.4Link to Ensembl Protein Viewer:ENSMUSP00000089085.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091504Re-query CCDS DB by Protein ID:ENSMUSP00000089085
Original member Current member NCBI NM_001290369.1 NP_001277298.1 Accepted alive Link to Nucleotide Sequence:NM_001290369.1Link to Protein Sequence:NP_001277298.1Re-query CCDS DB by Nucleotide ID:NM_001290369Re-query CCDS DB by Protein ID:NP_001277298Link to BLAST:NP_001277298.1

Chromosomal Locations for CCDS 70972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3284379 3284406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3304812 3304947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3305397 3305439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3309467 3309611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3312456 3312574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3312662 3312753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3312861 3312977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3314694 3314864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3316140 3316248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3322571 3322741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3324831 3324998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3325264 3325401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3326071 3326091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGAGGAGGAGACCGAACACGCCAAAGGAAGCCCTGGAGGGGATTTGGGAGCAAAAAAGAAAAAGAAGAA
ACAAAAGAGAAAAAAGGAGAAGCCAAATTCTGGGGGTACCAAGTCCGACTCTGCATCTGACTCCCAGGAG
ATTAAGATTCAGCAGTCTTCTAAACACAACGCCATCTGGCAGCAGATTTCAGCAGGAGCAGCCATGGAAT
CCCACCATCCCTATTCAGAAGCTACAAGACATCCAGAGAGCAATGGAGCTGCTGTCTGCATGCCAAGGCC
CAGCCAGGAACATTGATGAGGCCACAAAACGCAGATACCAGTTTTGGGACACACAGCCAGTGCCCAAATT
GAATGAAGTCATAACATCTCATGGTGCAATTGAACCAGACAAAGACAATATCCGCCAGGAACCATATTCT
TTGCCGCAAGGTTTTATGTGGGACACTTTAGACTTGAGTAATGCCGAAGTGCTGAAGGAGCTGTATACGT
TGCTGAATGAGAATTATGTGGAAGACGATGACAATATGTTCCGCTTTGACTATTCACCTGAGTTTCTGCT
GTGGGCTCTGCGCCCCCCAGGATGGCTTCTGCAGTGGCACTGTGGAGTCCGAGTGTCTTCAAATAAAAAG
TTAGTAGGTTTCATAAGTGCCATTCCAGCAAACATCCGAATTTATGATAGTGTGAAGAGGATGGTAGAAA
TCAACTTTCTTTGTGTCCATAAGAAACTGAGATCAAAACGGGTAGCCCCAGTGTTGATTCGAGAAATAAC
CAGAAGAGTGAACCTGGAAGGCATCTTTCAGGCTGTGTATACTGCGGGAGTAGTTCTTCCTAAGCCTGTG
GCCACTTGCAGGTATTGGCACCGATCCCTAAACCCCAGGAAACTGGTGGAAGTGAAATTTTCTCACCTGA
GTAGAAACATGACCTTACAGAGAACGATGAAGCTTTACAGACTTCCAGATGTTACAAAGACTTCAGGTTT
GAGACCAATGGAACCAAAAGACATCAAAGCAGTCCGAGAGCTAATCAACATCTACTTGAAGCAGTTTCAT
CTAGCTCCAGTGATGGATGACGCAGAAGTGGCCCACTGGTTCCTGCCCAGGGAGCACATCATTGACACGT
TTGTAGTGGAGAACCCCAGTGGGAAGCTGACTGACTTCCTGAGCTTCTACACTCTCCCCTCCACGGTTAT
GCACCACCCAGCTCACAAAAGCCTCAAGGCTGCCTATTCCTTCTACAACATTCACACAGAGACACCCCTG
CTGGACCTCATGAATGATGCGCTCATTATAGCCAAATTGAAAGGATTTGATGTGTTCAATGCACTAGATT
TGATGGAAAATAAGACCTTCTTGGAAAAACTAAAGTTTGGTATAGGAGATGGCAACTTACAGTATTATTT
GTACAACTGGAGGTGTCCAGGGACAGACTCTGAAAAGGTTGGACTTGTTCTACAGTAG

Translation (485 aa):
MRRRPNTPKEALEGIWEQKRKRRNKREKRRSQILGVPSPTLHLTPRRLRFSSLLNTTPSGSRFQQEQPWN
PTIPIQKLQDIQRAMELLSACQGPARNIDEATKRRYQFWDTQPVPKLNEVITSHGAIEPDKDNIRQEPYS
LPQGFMWDTLDLSNAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKK
LVGFISAIPANIRIYDSVKRMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPV
ATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKAVRELINIYLKQFH
LAPVMDDAEVAHWFLPREHIIDTFVVENPSGKLTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPL
LDLMNDALIIAKLKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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