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Report for CCDS25345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25345.1 Public Mus musculus 11 Stard3 23 108 98 CCDS HistoryNCBI Gene:59045Re-query CCDS DB by CCDS ID:25345.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018311.4 ENSMUSP00000018311.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018311.4Link to Ensembl Protein Viewer:ENSMUSP00000018311.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018311Re-query CCDS DB by Protein ID:ENSMUSP00000018311
Original member NCBI NM_021547.3 NP_067522.1 Updated not alive Link to Nucleotide Sequence:NM_021547.3Link to Protein Sequence:NP_067522.1Re-query CCDS DB by Nucleotide ID:NM_021547Re-query CCDS DB by Protein ID:NP_067522
Current member NCBI NM_021547.4 NP_067522.1 Accepted alive Link to Nucleotide Sequence:NM_021547.4Link to Protein Sequence:NP_067522.1Re-query CCDS DB by Nucleotide ID:NM_021547Re-query CCDS DB by Protein ID:NP_067522Link to BLAST:NP_067522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067522.1 446 Q61542 446 100% 0 0

Chromosomal Locations for CCDS 25345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98372121 98372342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98375080 98375157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98375476 98375553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98375675 98375728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98376490 98376607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98376752 98376850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98377065 98377120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98377450 98377542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98378156 98378218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98378335 98378430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98378738 98378817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98378894 98378998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98379973 98380066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98380458 98380562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGAGCAAGCGACCTGGTGATCTGGCCTGTGACTTGGAGCGCAGTTTGCCGGCCCTGGCCTCCCTGGGCA
CCTCACTGTCCCACAGCCAGAGCCTCTCCTCACACTTCATCCCGCCACCTCTGGAGAAGCGTAGGGCCAT
CTCCGACGTCCGCCGCACCTTCTGCCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTTCTCTGGATC
ATCGAGCTAAATACCAACACTGGCATCCGGAAGAACTTGGAGCAGGAGGTGATCCACTACAGCTTCCAGA
GCTCGTTCTTCGACATCTTTGTTCTGGCTTTCTTCCGCTTCTCTGGGCTGCTCCTGGGCTATGCTGTGCT
CCGTCTCCAGCACTGGTGGGTGATTGCGGTCACCACACTGGTGTCCAGTGCATTCCTCATTGTCAAGGTC
ATCCTTTCTGAGTTGCTCAGCAAAGGGGCATTCGGGTACCTGCTCCCCATTGTCTCTTTCGTCCTGGCCT
GGCTGGAGACCTGGTTCCTTGATTTCAAAGTCTTACCCCAGGAGGCTGAAGAGGAGAGATGGTATCTTGC
TGCCCAGGCTGCTGTTGCCCGTGGACCCCTGCTGTTCTCCGGTGCTTTGTCTGAGGGCCAGTTCTACTCT
CCCCCAGAATCCTTTGCAGGGTCTGACAATGAATCAGATGAGGAAGTCACCGGGAAGAAAAGTTTCTCTG
CCCAGGAGCGGGAGTACATCCGGCAGGGAAAGGAAGCTACTGCGGTGGTGGATCAGATCTTGGCCCAGGA
GGAGAACTGGAAGTTCGAGAGGAGTAACGAGTATGGGGACACTGTGTACACCATTGAAGTTCCCTTCCAT
GGCAAGACCTTCATCTTGAAGACCTTCCTGCCCTGTCCTGCTGAGCTGGTGTATCAGGAAGTAATCCTGC
AGCCTGAGAGGATGGTGCTGTGGAACAAGACGGTGACTGCCTGCCAGATCCTACAGCGGGTAGAGGACAA
CACCCTTGTCTCCTATGATGTGTCATCCGGAGCTGCAGGTGGCGTTGTGTCCCCCAGGGACTTTGTGAAT
GTCCGACGTATTGAGCGGCGCAGAGACCGATACCTGTCATCCGGCATTGCCACCACACACTGCTCCAAGC
CCCCCACGCACAAATATGTCAGAGGGGAGAACGGCCCCGGAGGCTTCATTGTGCTCAAGTCAGCCAACAA
CCCCCGGGTCTGCACCTTCGTCTGGATTCTTAACACAGATCTTAAGGGCCGCTTGCCTCGGTACCTTATC
CACCAGAGCCTTGGGGCCACCATGTTTGAATTTGCCTTTCACCTGCGGCAGCGTGTTGGAGAGCTGGGGG
CCCGAGCTTGA

Translation (446 aa):
MSKRPGDLACDLERSLPALASLGTSLSHSQSLSSHFIPPPLEKRRAISDVRRTFCLFVTFDLLFISLLWI
IELNTNTGIRKNLEQEVIHYSFQSSFFDIFVLAFFRFSGLLLGYAVLRLQHWWVIAVTTLVSSAFLIVKV
ILSELLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEAEEERWYLAAQAAVARGPLLFSGALSEGQFYS
PPESFAGSDNESDEEVTGKKSFSAQEREYIRQGKEATAVVDQILAQEENWKFERSNEYGDTVYTIEVPFH
GKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLVSYDVSSGAAGGVVSPRDFVN
VRRIERRRDRYLSSGIATTHCSKPPTHKYVRGENGPGGFIVLKSANNPRVCTFVWILNTDLKGRLPRYLI
HQSLGATMFEFAFHLRQRVGELGARA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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