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Report for CCDS16313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16313.1 Public Mus musculus 2 Or5w19 23 108 98 CCDS HistoryNCBI Gene:258103Re-query CCDS DB by CCDS ID:16313.1Re-query CCDS DB by GeneID:258103See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051058.2 ENSMUSP00000054645.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051058.2Link to Ensembl Protein Viewer:ENSMUSP00000054645.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051058Re-query CCDS DB by Protein ID:ENSMUSP00000054645
Original member Current member EBI ENSMUST00000213308.2 ENSMUSP00000151045.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213308.2Link to Ensembl Protein Viewer:ENSMUSP00000151045.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213308Re-query CCDS DB by Protein ID:ENSMUSP00000151045
Original member Current member NCBI NM_001011834.1 NP_001011834.1 Accepted alive Link to Nucleotide Sequence:NM_001011834.1Link to Protein Sequence:NP_001011834.1Re-query CCDS DB by Nucleotide ID:NM_001011834Re-query CCDS DB by Protein ID:NP_001011834Link to BLAST:NP_001011834.1

Chromosomal Locations for CCDS 16313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87867993 87868925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGGTTGGGAACTGTTCAGCCACTGAGTTCCTTTTCTTGGGAATTACCAATAATCCTGTGATCAAGG
TGATTTTATTTACCACTTTTCTAATTGTCTATCTCATTATTCTTATTGAAAATCTTGGAATGATAATTTT
GATCAGGATGGACCATCAGCTTCACATCCCAATGTACTTTTTCCTCAGCCACCTCTCTTTCTCTGATGTC
TGCTACTCCTCTGCAGTTGGACCAAAGATGTTATTGGACCTGCTTGCCAAGAGCAGCAATTCAATTACTT
TTCTTGGCTGTGTTCTTCAGTTCTTCATCTTCTGCATCTTTACAGATGTGGAGTGTATGCTGCTGGCAAT
GATGGCGTTTGATCGGTACAAGGCAATCAGCAACCCCTTGCTATATGCAGTAGATATGTCCAGCAAGGTG
TGTTACCAACTTCTGGCTGTAGTTTACACAGTTGCCATTGTAGATGCTGTAGTACACACAACATTGACAT
TTCGTTTGTGTTTCTGTGGGTCCAAAGAAATCAACCACTTCTTCTGTGATTTACCTCCACTATACATGCT
CTCCTGCTCTGACATACAAGTCAATGAGCTTGCCTTATTTACTGTTTTTGGTTTCATTGAACTGAGCACC
ATCTCAGGAGTACTTGTCTCTTACTGCTATATCATTCTATCAGTCCTGAAGATCCGTTCTGCTGAGGGCA
GGTTCAAAGCTTTCTCCACCTGCACCTCTCATTTAACTGCAGTTGCAATTTTCCAGGGAACTATGCTTTT
CATGTACTTTCGGCCAAGTTCTTCTTATTCTCTAGATCAAGACAAAATGACCTCACTGTTTTACACCTTG
GTGATCCCTGTGTTGAACCCTCTGATTTACAGCCTGAGGAACAAGGATGTGAAAGAGGCACTCCAAAAAC
TGAAAACAAAAACTTGGTTCTAA

Translation (310 aa):
MEVGNCSATEFLFLGITNNPVIKVILFTTFLIVYLIILIENLGMIILIRMDHQLHIPMYFFLSHLSFSDV
CYSSAVGPKMLLDLLAKSSNSITFLGCVLQFFIFCIFTDVECMLLAMMAFDRYKAISNPLLYAVDMSSKV
CYQLLAVVYTVAIVDAVVHTTLTFRLCFCGSKEINHFFCDLPPLYMLSCSDIQVNELALFTVFGFIELST
ISGVLVSYCYIILSVLKIRSAEGRFKAFSTCTSHLTAVAIFQGTMLFMYFRPSSSYSLDQDKMTSLFYTL
VIPVLNPLIYSLRNKDVKEALQKLKTKTWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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