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Report for CCDS19763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19763.1 Public Mus musculus 5 Ache 23 108 98 CCDS HistoryNCBI Gene:11423Re-query CCDS DB by CCDS ID:19763.1Re-query CCDS DB by GeneID:11423See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19763.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024099.10 ENSMUSP00000024099.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024099.10Link to Ensembl Protein Viewer:ENSMUSP00000024099.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024099Re-query CCDS DB by Protein ID:ENSMUSP00000024099
Original member Current member EBI ENSMUST00000085934.3 ENSMUSP00000083097.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085934.3Link to Ensembl Protein Viewer:ENSMUSP00000083097.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085934Re-query CCDS DB by Protein ID:ENSMUSP00000083097
Original member Current member NCBI NM_001290010.1 NP_001276939.1 Accepted alive Link to Nucleotide Sequence:NM_001290010.1Link to Protein Sequence:NP_001276939.1Re-query CCDS DB by Nucleotide ID:NM_001290010Re-query CCDS DB by Protein ID:NP_001276939Link to BLAST:NP_001276939.1
Original member Current member NCBI NM_009599.4 NP_033729.1 Accepted alive Link to Nucleotide Sequence:NM_009599.4Link to Protein Sequence:NP_033729.1Re-query CCDS DB by Nucleotide ID:NM_009599Re-query CCDS DB by Protein ID:NP_033729Link to BLAST:NP_033729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276939.1 614 P21836-1 614 100% 0 0
NP_033729.1 614 P21836-1 614 100% 0 0

Chromosomal Locations for CCDS 19763.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137290034 137291101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137291479 137291963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137293168 137293337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137294117 137294238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGAGGCCTCCCTGGTATCCCCTGCATACACCTTCCCTGGCTTTTCCACTCCTCTTCCTCCTCCTCTCCC
TCCTGGGAGGAGGGGCAAGGGCTGAGGGCCGGGAAGACCCGCAGCTGCTGGTGAGGGTTCGAGGGGGCCA
GCTGAGGGGCATCCGCCTGAAGGCCCCTGGAGGCCCAGTCTCAGCTTTTCTGGGCATCCCCTTTGCAGAG
CCACCTGTGGGCTCACGTAGATTTATGCCACCAGAGCCCAAGCGGCCCTGGTCAGGAGTGTTGGATGCTA
CCACCTTCCAAAATGTCTGCTACCAGTACGTGGACACCCTGTACCCTGGGTTTGAGGGTACTGAGATGTG
GAACCCCAACCGAGAGTTGAGTGAAGACTGCCTGTATCTTAATGTGTGGACACCATACCCCAGACCTGCT
TCTCCCACACCTGTCCTCATCTGGATCTATGGGGGTGGTTTCTACAGCGGAGCGGCCTCCTTGGATGTGT
ATGACGGCCGTTTCCTGGCCCAGGTTGAGGGAGCTGTGTTGGTATCTATGAACTACCGAGTGGGAACCTT
TGGCTTCTTGGCCCTACCAGGAAGCAGAGAAGCCCCTGGCAATGTAGGTCTGCTGGATCAACGGCTTGCC
TTGCAATGGGTGCAAGAAAATATTGCAGCCTTTGGGGGCGACCCGATGTCAGTGACTCTGTTTGGGGAGA
GTGCGGGTGCAGCCTCCGTGGGCATGCACATACTGTCCCTGCCCAGCAGGAGCCTCTTCCACAGGGCTGT
CCTCCAGAGTGGCACACCCAATGGGCCCTGGGCCACTGTGAGTGCTGGAGAGGCCAGGCGCAGGGCCACA
CTGCTGGCCCGCCTTGTGGGCTGTCCCCCAGGTGGCGCTGGTGGCAATGACACCGAGCTGATAGCCTGCT
TGAGGACAAGGCCCGCTCAGGACCTGGTGGACCACGAGTGGCACGTCCTGCCTCAAGAAAGTATCTTCCG
ATTTTCCTTCGTGCCTGTGGTAGACGGGGACTTCCTCAGTGACACACCGGAGGCTCTCATCAATACTGGA
GATTTTCAAGACCTGCAGGTGCTGGTGGGTGTGGTGAAGGACGAGGGCTCCTACTTTCTGGTTTACGGGG
TCCCAGGCTTCAGCAAAGACAATGAATCTCTCATCAGCCGGGCCCAGTTCCTGGCTGGGGTGCGGATCGG
TGTACCCCAAGCAAGTGACCTGGCAGCCGAGGCTGTGGTCCTGCATTACACAGACTGGCTGCACCCTGAG
GACCCTACTCACCTGAGAGATGCCATGAGTGCAGTGGTAGGCGACCACAACGTTGTGTGCCCTGTGGCCC
AGCTGGCTGGGCGACTGGCTGCCCAAGGGGCCCGGGTCTATGCCTACATCTTTGAACACCGTGCCTCCAC
ACTGACTTGGCCCCTCTGGATGGGGGTGCCCCATGGCTATGAAATCGAGTTCATCTTTGGGCTCCCCCTG
GATCCCTCGCTGAACTACACCACGGAGGAGAGGATCTTTGCTCAGCGACTTATGAAATACTGGACCAATT
TTGCCCGCACAGGGGACCCCAATGACCCTCGAGACTCCAAATCTCCACAGTGGCCACCGTACACCACTGC
CGCGCAGCAATATGTGAGCCTGAACCTGAAGCCCTTAGAGGTGCGGCGGGGACTGCGCGCCCAGACCTGC
GCCTTCTGGAATCGCTTTCTCCCCAAATTGCTCAGCGCCACCGATACTCTGGACGAGGCGGAGCGCCAGT
GGAAGGCCGAGTTCCACCGCTGGAGCTCCTACATGGTGCACTGGAAGAACCAGTTCGACCACTATAGCAA
GCAGGAGCGCTGCTCAGACCTGTGA

Translation (614 aa):
MRPPWYPLHTPSLAFPLLFLLLSLLGGGARAEGREDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAE
PPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSEDCLYLNVWTPYPRPA
SPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGNVGLLDQRLA
LQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPNGPWATVSAGEARRRAT
LLARLVGCPPGGAGGNDTELIACLRTRPAQDLVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEALINTG
DFQDLQVLVGVVKDEGSYFLVYGVPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPE
DPTHLRDAMSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPL
DPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSLNLKPLEVRRGLRAQTC
AFWNRFLPKLLSATDTLDEAERQWKAEFHRWSSYMVHWKNQFDHYSKQERCSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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