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Report for CCDS33074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33074.1 Public Homo sapiens 19 SCAF1 24 110 108 CCDS HistoryNCBI Gene:58506Re-query CCDS DB by CCDS ID:33074.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360565.8 ENSP00000353769.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360565.8Link to Ensembl Protein Viewer:ENSP00000353769.2Re-query CCDS DB by Nucleotide ID:ENST00000360565Re-query CCDS DB by Protein ID:ENSP00000353769
Original member Current member NCBI NM_021228.3 NP_067051.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021228.3Link to Protein Sequence:NP_067051.2Re-query CCDS DB by Nucleotide ID:NM_021228Re-query CCDS DB by Protein ID:NP_067051Link to BLAST:NP_067051.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067051.2 1312 Q9H7N4 1312 100% 0 0

Chromosomal Locations for CCDS 33074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49645027 49645134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49645354 49645411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49646108 49646202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49646526 49646626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49646715 49646830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49650868 49653705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49654349 49654431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49654652 49654870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49657761 49657889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49658208 49658399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3939 nt):
ATGGAGGAAGAAGATGAGTCTCGAGGGAAGACAGAGGAGTCGGGGGAGGATCGGGGCGATGGTCCGCCAG
ACAGAGACCCCACGCTTTCTCCTTCTGCCTTTATCCTGCGAGCCATCCAGCAGGCTGTGGGAAGCTCCCT
GCAGGGGGACCTGCCCAATGATAAAGATGGCTCTCGGTGTCATGGCCTTCGATGGCGGCGCTGCCGGAGT
CCACGGTCAGAGCCCCGTTCCCAGGAATCAGGGGGCACTGACACGGCTACTGTGTTGGACATGGCCACGG
ACAGCTTCCTCGCAGGGCTGGTGAGTGTCCTGGATCCCCCGGATACCTGGGTTCCCAGCCGCCTGGACCT
GCGGCCTGGCGAAAGTGAGGACATGCTGGAGCTGGTGGCTGAGGTCCGAATCGGGGACAGAGATCCCATC
CCTCTGCCTGTGCCCAGCCTGCTGCCCCGTCTCAGGGCCTGGAGGACGGGCAAAACGGTTTCTCCACAGT
CGAACTCCTCTAGGCCCACCTGTGCCCGTCACCTCACCTTGGGCACGGGAGACGGGGGCCCTGCCCCACC
CCCTGCCCCCTCCTCTGCATCCTCCTCCCCTTCCCCTTCTCCCTCATCTTCCTCCCCTTCCCCTCCCCCA
CCCCCACCGCCCCCTGCACCCCCAGCCCCACCTGCCCCCCGATTCGATATCTATGACCCCTTCCACCCCA
CCGACGAGGCCTACTCTCCACCGCCTGCTCCGGAGCAAAAGTACGACCCTTTTGAGCCCACCGGCTCCAA
CCCCAGCTCATCAGCGGGGACCCCCTCACCTGAGGAGGAAGAGGAGGAGGAAGAGGAAGAAGAAGAGGAA
GAGGAAGACGAGGAGGAGGAGGAAGGCCTGTCCCAGAGCATCAGCCGCATCTCGGAGACCCTGGCGGGCA
TCTACGATGACAACAGCCTGAGCCAGGACTTCCCAGGTGACGAGAGCCCCCGCCCGGACGCGCAGCCCAC
ACAGCCGACTCCCGCCCCTGGAACGCCGCCCCAGGTGGACTCCACCCGGGCTGATGGAGCCATGCGCCGG
CGGGTCTTCGTGGTGGGGACCGAGGCAGAGGCTTGTCGGGAAGGCAAGGTCTCGGTGGAGGTGGTGACCG
CTGGTGGAGCCGCCCTCCCGCCGCCCCTGCTGCCGCCCGGCGACTCGGAGATCGAGGAAGGGGAGATCGT
CCAGCCGGAGGAGGAGCCCAGGCTGGCGCTGTCCCTCTTCCGCCCCGGCGGCCGGGCCGCCCGGCCTACA
CCGGCCGCCTCGGCCACCCCCACGGCCCAGCCCCTTCCTCAGCCTCCCGCTCCGCGGGCCCCCGAGGGGG
ACGACTTCTTGTCCCTGCATGCGGAGTCGGACGGCGAGGGCGCCCTGCAGGTGGACCTAGGGGAGCCGGC
TCCCGCGCCGCCCGCCGCCGACTCGCGCTGGGGCGGCCTGGACCTGCGCCGCAAGATCCTGACCCAACGG
CGGGAGCGCTACCGCCAGCGCTCGCCCTCCCCGGCGCCCGCGCCCGCCCCGGCCGCCGCTGCTGGTCCGC
CCACGCGCAAGAAGTCCAGGCGGGAACGCAAGCGCAGCGGCGAGGCCAAGGAGGCCGCCTCGTCCTCGTC
GGGCACCCAGCCAGCGCCGCCCGCCCCGGCCTCGCCCTGGGACTCCAAGAAGCACCGCTCGCGGGACCGC
AAGCCCGGCTCCCACGCCTCGTCGTCCGCCCGCCGCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCACCC
GCCGCCGCTCGCGCAGCACCGACCGCCGCCGCGGGGGCAGCCGCAGGTCGCGGTCCCGGGAGAAGCGGCG
ACGGCGGCGGCGCTCCGCCTCCCCGCCCCCGGCCACTTCCTCATCGTCGTCCTCGAGGCGCGAGCGGCAC
CGCGGGAAACACCGGGACGGTGGCGGCAGCAAGAAGAAGAAGAAGCGGTCGCGGTCCCGGGGTGAGAAGC
GGTCTGGGGATGGCAGCGAGAAGGCCCCGGCGCCCGCCCCGCCGCCCTCTGGCTCCACCTCGTGTGGTGA
CCGCGACAGCCGCCGCCGGGGGGCCGTGCCACCCTCCATCCAGGACCTCACGGACCACGACCTCTTCGCC
ATCAAGCGGACCATCACGGTGGGCCGGCTTGACAAGTCCGACCCCCGAGGACCCTCTCCTGCTCCGGCCT
CCTCACCTAAGCGGGAGGTCCTGTACGACTCCGAGGGACTGAGCGGCGAGGAGCGGGGCGGCAAGAGCAG
CCAGAAGGATCGGCGCCGCTCGGGGGCCGCCTCCTCCTCCTCCTCTTCCCGGGAGAAGGGGTCTCGTCGG
AAGGCGCTGGACGGGGGTGACCGGGATCGGGACAGGGACAGAGATAGGGACAGGGACAGGTCATCCAAGA
AGGCCCGGCCCCCCAAGGAGTCGGCGCCTTCCTCAGGGCCCCCGCCAAAGCCACCAGTCAGCAGCGGCTC
AGGCTCTTCATCCTCGTCGTCCTCCTGTTCTTCCCGGAAGGTGAAGCTGCAGTCCAAGGTGGCGGTGCTG
ATCCGCGAGGGTGTCAGCAGCACCACCCCGGCCAAGGATGCCGCGTCAGCCGGCCTGGGCTCCATTGGCG
TCAAATTCAGCCGTGACCGCGAGAGTCGCTCCCCCTTCCTCAAACCTGACGAGCGGGCCCCCACTGAGAT
GGCCAAAGCAGCTCCGGGCAGCACCAAGCCCAAAAAGACCAAGGTCAAGGCCAAGGCAGGGGCCAAGAAA
ACCAAGGGGACCAAGGGAAAGACCAAGCCATCCAAGACCAGGAAAAAGGTCCGCAGTGGAGGTGGCAGCG
GGGGCAGTGGTGGCCAGGTGTCGCTGAAGAAGTCCAAGGCGGATAGCTGCAGCCAGGCGGCAGGCACCAA
GGGGGCGGAGGAGACTTCCTGGTCCGGGGAGGAGCGGGCAGCCAAGGTTCCTAGCACCCCGCCCCCCAAG
GCAGCCCCACCACCCCCTGCCCTCACTCCGGACTCGCAGACCGTGGACAGCAGCTGCAAGACACCTGAGG
TCTCCTTCCTGCCCGAGGAGGCCACTGAGGAGGCTGGGGTCCGAGGTGGGGCGGAGGAGGAGGAGGAGGA
AGAAGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGCAGCAGCCTGCTACCACCACGGCCACCAGCACT
GCTGCAGCCGCCCCAAGCACTGCCCCCAGCGCGGGGTCCACAGCCGGTGACTCGGGGGCGGAGGACGGGC
CAGCTTCCCGTGTCTCCCAGCTGCCCACGTTGCCCCCGCCCATGCCCTGGAATCTGCCAGCTGGTGTGGA
CTGCACCACCAGCGGCGTCCTGGCCTTGACTGCACTTCTCTTCAAGATGGAAGAAGCCAACCTGGCGAGC
CGAGCGAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGATCCTCAGCCACAGAAAGCCACCCTCAAGTC
TGGGGATGACCCCAGCTCCTGTGCCCACCTCTTTGGGTCTGCCCCCTGGCCCCTCCAGCTACCTGCTTCC
TGGCAGCCTCCCTCTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCTGGCTGCCACGTCTGAC
AAGAGAGAGGGCAGCAGCAGCTCTGAGGGCCGTGGGGACACAGATAAGTATCTGAAGAAGCTGCACACGC
AGGAGCGGGCGGTGGAGGAGGTGAAGCTGGCCATCAAGCCATACTATCAGAAGAAGGACATCACCAAGGA
GGAGTACAAGGACATCCTGAGGAAGGCCGTCCACAAGATCTGCCACAGCAAAAGTGGGGAAATCAACCCA
GTGAAGGTGAGCAACCTGGTGCGGGCCTACGTCCAGCGCTACCGCTACTTCCGCAAGCACGGTCGCAAGC
CAGGGGACCCCCCAGGGCCCCCACGGCCGCCCAAGGAGCCAGGGCCCCCAGACAAGGGTGGCCCGGGCCT
GCCCCTGCCCCCTCTCTGA

Translation (1312 aa):
MEEEDESRGKTEESGEDRGDGPPDRDPTLSPSAFILRAIQQAVGSSLQGDLPNDKDGSRCHGLRWRRCRS
PRSEPRSQESGGTDTATVLDMATDSFLAGLVSVLDPPDTWVPSRLDLRPGESEDMLELVAEVRIGDRDPI
PLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPP
PPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEE
EEDEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDESPRPDAQPTQPTPAPGTPPQVDSTRADGAMRR
RVFVVGTEAEACREGKVSVEVVTAGGAALPPPLLPPGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPT
PAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKILTQR
RERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDR
KPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERH
RGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFA
IKRTITVGRLDKSDPRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRR
KALDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVL
IREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTKVKAKAGAKK
TKGTKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAEETSWSGEERAAKVPSTPPPK
AAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEEEEEEEEEQQPATTTATST
AAAAPSTAPSAGSTAGDSGAEDGPASRVSQLPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLAS
RAKAQELIQATNQILSHRKPPSSLGMTPAPVPTSLGLPPGPSSYLLPGSLPLGGCGSTPPTPTGLAATSD
KREGSSSSEGRGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINP
VKVSNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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