NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10127.1 Public Homo sapiens 15 SQOR 24 110 108 CCDS HistoryNCBI Gene:58472Re-query CCDS DB by CCDS ID:10127.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260324.12 ENSP00000260324.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260324.12Link to Ensembl Protein Viewer:ENSP00000260324.7Re-query CCDS DB by Nucleotide ID:ENST00000260324Re-query CCDS DB by Protein ID:ENSP00000260324
Original member Current member EBI ENST00000568606.5 ENSP00000456019.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568606.5Link to Ensembl Protein Viewer:ENSP00000456019.1Re-query CCDS DB by Nucleotide ID:ENST00000568606Re-query CCDS DB by Protein ID:ENSP00000456019
Original member Current member NCBI NM_001271213.2 NP_001258142.1 Accepted alive Link to Nucleotide Sequence:NM_001271213.2Link to Protein Sequence:NP_001258142.1Re-query CCDS DB by Nucleotide ID:NM_001271213Re-query CCDS DB by Protein ID:NP_001258142Link to BLAST:NP_001258142.1
Original member Current member NCBI NM_021199.4 NP_067022.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021199.4Link to Protein Sequence:NP_067022.1Re-query CCDS DB by Nucleotide ID:NM_021199Re-query CCDS DB by Protein ID:NP_067022Link to BLAST:NP_067022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258142.1 450 Q9Y6N5 450 100% 0 0
NP_067022.1 450 Q9Y6N5 450 100% 0 0

Chromosomal Locations for CCDS 10127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 45658924 45659157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45661955 45662125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45669928 45669981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45673607 45673801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45676101 45676310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45682478 45682661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45688337 45688404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45689039 45689217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45690973 45691030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGTGCCACTGGTGGCTGTGGTATCAGGGCCCCGTGCCCAGCTCTTTGCCTGCCTGCTCAGGCTGGGCA
CTCAGCAGGTCGGCCCCCTTCAGCTGCACACCGGGGCCAGCCATGCGGCCAGGAACCATTATGAGGTGCT
GGTGCTGGGTGGGGGCAGTGGCGGAATCACCATGGCTGCCCGCATGAAGAGGAAAGTGGGTGCAGAGAAT
GTGGCCATTGTTGAGCCCAGTGAGAGACATTTCTACCAGCCAATCTGGACACTGGTGGGTGCTGGTGCCA
AACAATTGTCCTCATCTGGTCGTCCCACGGCAAGTGTGATTCCATCTGGTGTAGAATGGATCAAAGCTAG
AGTGACTGAGTTGAACCCAGACAAGAACTGCATTCACACAGATGACGACGAGAAGATCTCCTACCGATAT
CTTATTATTGCTCTCGGAATCCAGCTGGACTATGAGAAGATTAAAGGCCTACCTGAAGGTTTCGCTCATC
CCAAAATAGGGTCGAATTATTCAGTTAAGACTGTAGAGAAGACATGGAAAGCTCTGCAGGACTTCAAAGA
GGGCAATGCCATCTTCACCTTCCCAAATACTCCAGTGAAGTGTGCTGGAGCCCCTCAGAAGATCATGTAC
TTATCAGAAGCCTACTTCAGGAAGACAGGGAAGCGATCCAAGGCCAATATCATTTTCAACACTTCTCTTG
GAGCCATTTTCGGGGTTAAGAAGTATGCAGATGCCCTGCAGGAGATCATCCAGGAGCGGAACCTCACTGT
TAACTACAAGAAAAACCTCATTGAAGTCCGAGCCGATAAACAAGAGGCTGTATTTGAGAACCTGGACAAA
CCAGGAGAGACCCAAGTGATTTCATATGAAATGCTTCATGTCACACCTCCAATGAGCCCACCAGATGTCC
TCAAGACCAGTCCTGTGGCTGATGCTGCTGGTTGGGTGGATGTGGATAAAGAAACTCTGCAACACAGGAG
GTACCCAAATGTGTTTGGGATTGGGGACTGCACCAACCTTCCTACGTCAAAGACCGCTGCTGCAGTAGCT
GCCCAGTCAGGAATACTTGATAGGACAATTTCTGTAATTATGAAGAATCAAACACCAACAAAGAAGTATG
ATGGCTACACATCATGTCCACTGGTGACCGGCTACAACCGTGTGATTCTTGCTGAGTTTGACTACAAAGC
AGAGCCGCTAGAAACCTTCCCCTTTGATCAAAGCAAAGAGCGCCTTTCCATGTATCTCATGAAAGCTGAC
CTGATGCCTTTCCTGTATTGGAATATGATGCTAAGGGGTTACTGGGGAGGACCAGCGTTTCTGCGCAAGT
TGTTTCATCTAGGTATGAGTTAA

Translation (450 aa):
MVPLVAVVSGPRAQLFACLLRLGTQQVGPLQLHTGASHAARNHYEVLVLGGGSGGITMAARMKRKVGAEN
VAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVTELNPDKNCIHTDDDEKISYRY
LIIALGIQLDYEKIKGLPEGFAHPKIGSNYSVKTVEKTWKALQDFKEGNAIFTFPNTPVKCAGAPQKIMY
LSEAYFRKTGKRSKANIIFNTSLGAIFGVKKYADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDK
PGETQVISYEMLHVTPPMSPPDVLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKTAAAVA
AQSGILDRTISVIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYKAEPLETFPFDQSKERLSMYLMKAD
LMPFLYWNMMLRGYWGGPAFLRKLFHLGMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH