NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9279.1 Public Homo sapiens 12 PXMP2 24 110 108 CCDS HistoryNCBI Gene:5827Re-query CCDS DB by CCDS ID:9279.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317479.8 ENSP00000321271.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317479.8Link to Ensembl Protein Viewer:ENSP00000321271.3Re-query CCDS DB by Nucleotide ID:ENST00000317479Re-query CCDS DB by Protein ID:ENSP00000321271
Original member Current member NCBI NM_018663.3 NP_061133.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018663.3Link to Protein Sequence:NP_061133.1Re-query CCDS DB by Nucleotide ID:NM_018663Re-query CCDS DB by Protein ID:NP_061133Link to BLAST:NP_061133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061133.1 195 Q9NR77 195 100% 0 0

Chromosomal Locations for CCDS 9279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 132687671 132687792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132690263 132690376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132695884 132696046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132701250 132701369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 132704619 132704687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCGCCGGCCGCGTCCAGGCTGCGGGCCGAAGCCGGGCTCGGGGCGCTGCCGCGGCGGGCGCTCGCCC
AGTACCTGCTCTTCCTGCGGCTCTACCCGGTGCTCACCAAGGCGGCCACCAGTGGCATTTTGTCAGCACT
TGGGAACTTCCTGGCCCAGATGATTGAGAAGAAGCGGAAAAAAGAAAACTCTAGAAGTCTGGATGTCGGT
GGGCCTCTGAGATATGCCGTTTACGGGTTCTTCTTCACAGGGCCGCTGAGTCACTTCTTCTACTTCTTCA
TGGAACATTGGATCCCTCCTGAGGTCCCCCTGGCAGGGCTCAGGAGGCTTCTCCTGGACCGCCTCGTCTT
TGCACCGGCCTTCCTCATGTTGTTCTTCCTCATCATGAACTTTCTGGAGGGGAAAGACGCCTCAGCCTTC
GCCGCCAAGATGAGGGGGGGCTTCTGGCCGGCGCTGAGGATGAACTGGCGGGTGTGGACGCCACTACAGT
TCATCAACATCAACTACGTCCCTCTGAAGTTCCGGGTGCTCTTCGCCAACCTGGCAGCTCTGTTCTGGTA
TGCCTACCTGGCCTCCTTGGGGAAGTGA

Translation (195 aa):
MAPAASRLRAEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVG
GPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFLEGKDASAF
AAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYLASLGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH