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Report for CCDS19468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19468.1 Public Mus musculus 5 Mrps18c 23 108 98 CCDS HistoryNCBI Gene:68735Re-query CCDS DB by CCDS ID:19468.1Re-query CCDS DB by GeneID:68735See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016977.14 ENSMUSP00000016977.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016977.14Link to Ensembl Protein Viewer:ENSMUSP00000016977.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000016977Re-query CCDS DB by Protein ID:ENSMUSP00000016977
Original member Current member NCBI NM_026826.1 NP_081102.1 Accepted alive Link to Nucleotide Sequence:NM_026826.1Link to Protein Sequence:NP_081102.1Re-query CCDS DB by Nucleotide ID:NM_026826Re-query CCDS DB by Protein ID:NP_081102Link to BLAST:NP_081102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081102.1 143 Q8R2L5 143 100% 0 0

Chromosomal Locations for CCDS 19468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100798770 100798860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100799552 100799613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100801908 100801991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100803053 100803110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100803970 100804029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100804332 100804408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGCCGCTCTGGTTGCTCTGTGCAGTGGTATAGGGAGGAAGAATTTGACAACCGCGGCTGGCTGCTTCA
CGGATCGCGGAACTCAAGCAGTTTCTGTGATTTGGAGACGATGTTTTTCACAGTTTGAACAGGTAACCAG
CAATGAGGACCTGCCAGTCCCAATGGAGAACCCCTACAAGGAGCCTCTTAAGAAGTGTGTCTTGTGTGAG
AAACGTGTAGATTACAAGAATGTGCAGCTTTTGTCCCAGTTTATTTCTCCATTTACCGGATGCATTTATG
GAAGGCACATAACAGGTCTTTGTGGAAAGAAACAGAGGGAAATAACTAAAGCCATTAAGAGAGCTCAGAA
AATGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAAGACCCTAGAGTTTGTAACATCAGA
TACCGAGAATAA

Translation (143 aa):
MAALVALCSGIGRKNLTTAAGCFTDRGTQAVSVIWRRCFSQFEQVTSNEDLPVPMENPYKEPLKKCVLCE
KRVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFMPVTYKDPAYLKDPRVCNIR
YRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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