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Report for CCDS22964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22964.1 Public Mus musculus 9 Cdon 23 108 98 CCDS HistoryNCBI Gene:57810Re-query CCDS DB by CCDS ID:22964.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042842.5 ENSMUSP00000045547.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042842.5Link to Ensembl Protein Viewer:ENSMUSP00000045547.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042842Re-query CCDS DB by Protein ID:ENSMUSP00000045547
Original member Current member EBI ENSMUST00000119129.9 ENSMUSP00000113977.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119129.9Link to Ensembl Protein Viewer:ENSMUSP00000113977.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119129Re-query CCDS DB by Protein ID:ENSMUSP00000113977
Original member NCBI NM_021339.2 NP_067314.2 Updated not alive Link to Nucleotide Sequence:NM_021339.2Link to Protein Sequence:NP_067314.2Re-query CCDS DB by Nucleotide ID:NM_021339Re-query CCDS DB by Protein ID:NP_067314
Current member NCBI NM_021339.3 NP_067314.2 Accepted alive Link to Nucleotide Sequence:NM_021339.3Link to Protein Sequence:NP_067314.2Re-query CCDS DB by Nucleotide ID:NM_021339Re-query CCDS DB by Protein ID:NP_067314Link to BLAST:NP_067314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067314.2 1250 Q32MD9 1250 100% 0 0

Chromosomal Locations for CCDS 22964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35452105 35452177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35452661 35452933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35454303 35454449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35455323 35455466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35456448 35456735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35457397 35457666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35463875 35464228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35469865 35470154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35470985 35471159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35473434 35473565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35476877 35477080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35477951 35478132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35478584 35478689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35483098 35483220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35486750 35486971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35488975 35489240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35491845 35491924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35503160 35503419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35504057 35504220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3753 nt):
ATGCATCCAGACCTCGGACCCTTATGGACATTGCTGTATGTTCTTGTGATTCTGTGTTCTTCTGTGAGCT
CAGACTTGGCACCTTATTTTATTTCTGAGCCACTCTCTGCTGTCCAGAAGCTTGGTAGACCCGTGGTCCT
ACATTGTTCTGCTAAACCTGTTACTGCCCGAATCTCATGGTTGCATAATGGAAAACGGTTGGACAGAAAC
ACAGAACAGATAAAGATTCATCGGGGGACTTTGACCATTCTGTCTCTTAACCCTTCCCTTTCTGGTTGCT
ACCAGTGCGTTGCCAACAACAGCGTTGGTGCCGTTGTGAGCGGCCCCGCAACAGTGTCCGCTGCAGCCCT
GGGTGATTTCGATTCATCAACAATGCACGTTATTACTGCAGAAGAGAAAAACACAGGCTTCATTGGCTGC
AGGGTACCAGAGAGTAACCCCAAAGCTGAGGTGCGCTATAAGATCCGGGGAAAGTGGCTGAAGCATTCCA
CAGGGAACTACATAATCCTTCCCTCAGGAAACCTTCAGGTTCTGAATGTGTCCTCTAAGGATAAGGGATC
CTACAAATGTGCTGCCTATAACCCTGTCACCAGTGAACTGAAGGTTGAGCCCACTGGCCGGAAGCTCCTT
GTGAGTCGTCCTTCCTCGAATGGCTTTCACATTCTTCACCCTGCTCTTTCTCAGGCATTAGCTGTCCTTC
CTCACAGCCCCGTTACCTTGGAGTGTGTGGTGAGTGGGGTTCCGGCCTCACAAGTGTATTGGCTGAAGGA
CGGTCAGGATGCCGTGGCAGGAAGCAACTGGAGAAGGCTGTACTCTCATCTGGCCACAGCTAGCATCGAC
CCAGCGGATTCGGGGAACTATTCCTGTGTGGTGGGCAACAAGTCCGGAGATGTGAAACACGTCACTTACA
TGGTCAATGTACTGGAGCATGCGTCAATTTCTAAAGGGCTGCACGATCAGAAGGTGTCCCTGGGGGCCAC
CGTACATTTTACCTGTGATGTTCATGGGAACCCAGCCCCCAACCGCACCTGGTTTCATAACGCACAGCCT
ATCCACCCCTCCTCACGGCATCTCACTGAAGGAAACGTGCTGAAGATCACCCGGGTTGTCATGGAAGATT
CTGGGCTATATCAGTGCGTAGCAGACAATGGCATTGGATTCATGCAGTCTACTGGGAGACTTCAAATTGA
ACAAGACAGTGGATGGAAGCCTGTTATTGTCACCGCACCAGCAAACATAGAGGTGATGGATGGAGACTTT
GTGACTTTGTCTTGTAATGCCACCGGAGTGCCTGTCCCAGTCATTCATTGGTACGGCCGCCATGGATTGA
TAACCAGCCATCCATCTCAGGTCCTTAGGTCCAAACCCCGAAAGTCCCACCTGTTCCGGCCTGGGGACCT
GGACCTGGAGCCTGTCTACCTCATCATGTCCCAAGCTGGCTCGAGCTCTCTGTCTATTCAGGCAGTCACT
CTGGAGCATGCTGGGAAATATACTTGTGAAGCTACAAACAAACATGGCAGCACACAGTCAGAAGCATTCC
TCACAGTTGTTCCTTTCGAGACAAACACAAAGGCAGAGTCAGTCACACCTTCTGAAGCTTCTCAGAATGA
TGAGCGAGACCCACAAGACGGTTCAGAGTCCAGCCTGCTGAACTTGTTTCCAGTGAAGGTGCATCCCAGT
GGAGTGGAATTGCCAGCAGAGAGAAATGCCTCGGTCCCCGATGCTCCTAACATACTGAGCCCCCCACAGA
CTCACATGCCAGACACGTACAACCTGGTGTGGAGGGCAGGGAGGGATGGCGGAATGCCCATCAACGCCTA
TTTCGTGAAGTACCGAAAGCTGGACGATGGTAGTGGTGCAGTGGGCAGCTGGCACACAGTTCGTGTCCCA
GGGAGTGAAAATGAGCTGCATCTAACTGAGCTGGAGCCATCAAGTCTCTATGAAGTTTTGATGGTGGCTA
GAAGTGCAGTTGGTGAAGGACAGCCTGCCATGCTTACCTTCCGGACCAGCAAAGAAAAAATGGCGTCATC
AAAAAACACCCAGGCCTCCTTTCCGCCTGTGGGCGTCCCCAAGCGGCCTGTTACTGCAGAGGCTTCCAAC
AGCAATTTTGGAGTTGTGCTTACGGATTCCTCCAGGCATAGTGGAGTCCCAGAGGCACCAGATCGACCTA
CTATCTCTATGGCGTCGGAGACCTCAGTCTATGTCACCTGGATTCCCCGAGCAAATGGTGGCTCTCCCAT
CACCGCCTTCAAGGTGGAATATAAACGGATGAGAACTAGTGATTGGCTGGTAGCGGCTGAAGACATTCCT
CCTTCCAAACTCTCTGTGGAAGTTCGTAGTTTAGAGCCAGGTTCAATATACAAATTTAGGGTCATTGCTA
TCAACCATTACGGTGAGAGTTTTCGGAGCTCAGCATCCCGTCCTTACCAGGTGGCCGGCTTCCCAAATCG
TTTTTCCAATCGCCCAATAACTGGACCTCACATCGCATACACAGAGGCTGTTAGCGACACTCAGATCATG
CTGAAATGGACGTATGTTCCATCAAGTAACAATAATACTCCCATTCAAGGATTCTATATCTACTACCGGC
CAACAGACAGTGACAATGACAGTGACTACAAGAGAGACGTTGTGGAAGGCTCAAAGCAGTGGCACACCAT
TGGTCACCTGCAGCCAGAGACCTCCTATGACATTAAGATGCAGTGCTTTAATGAAGGAGGGGAGAGTGAG
TTCAGCAACGTGATGATCTGCGAGACTAAAGTAAAACGTGTTCCTGGAGCTTCCGACTATCCCGTGAAAG
AGTTGAGTACCCCTCCCAGTTCCTCGGGAAACGCAGGGAACGTGGGGCCTGCAACCAGCCCCGCCAGGAG
CAGCGATATGTTGTACCTCATCGTTGGCTGTGTGCTTGGGGTTATGGTCCTCATTCTTATGGTTTTCATT
GCGCTGTGTCTGTGGAAGAGTCGCCAACAGAGCACCATACAGAAATATGATCCTCCAGGATATCTCTACC
AGGGGTCAGAGATTAATGGGCAGATGGTAGAGTATACCACTCTCTCAGGAGCAGCCCGGATCAACGGGAG
TGTTCACGGAGGCTTCCTCAGCAATGGCTGTTCTCATCTGCACCATAAAGGCCCCAGTGGAGTCAACGGG
ACCCTGAGTGGAAACATAAATGGAGGCCTTTATTCTGCACACACAAACTCCCTGACCAGGGCGTGTGTGG
AGTTTGAGCATCCTCACCATCTAGTGAATAGTGGAGGAGTGTACACAGCCGTCCCTCAGATGGACCCACT
GGAATGCATTAATTGTCGGAATTGCCGGAACAACAATAGGTGTTTCACCAAAACCAACAGTCCCCTTCCT
GTGGTCCCAGTGGTAGCCTCTTATCCTCAGGGTGGTCTGGAAATGAAGCCCCTCAATGCCATGAAGGTGC
CTGTGTGCCCAGCTTCCACAGTTCCTGACCATGGCCAGTTACCTGACGATTGTGTCAAGGACAGTGTGGC
ACCAATACCTACCCAGCATACTTGCTGCCAGGACAACATAAGTGACATCAATTCTGATTCCACAGAAGAC
ACAGCAGAGTTCAGCAGAGGAGACAGCAGTGGTCATTCTGAAGCAGAGGACAAAGTTTTCAGTTGGAATC
CTCTTATTTTGTCACCTGTCTTGGAGGACTGTGGTGAGAAGACAGCGAGGTCTCCCCCTGGACCTCCTCT
AGACGGGCTGTCGGTGGTCCTTCAGCAAGCCCAAGAGACCTGA

Translation (1250 aa):
MHPDLGPLWTLLYVLVILCSSVSSDLAPYFISEPLSAVQKLGRPVVLHCSAKPVTARISWLHNGKRLDRN
TEQIKIHRGTLTILSLNPSLSGCYQCVANNSVGAVVSGPATVSAAALGDFDSSTMHVITAEEKNTGFIGC
RVPESNPKAEVRYKIRGKWLKHSTGNYIILPSGNLQVLNVSSKDKGSYKCAAYNPVTSELKVEPTGRKLL
VSRPSSNGFHILHPALSQALAVLPHSPVTLECVVSGVPASQVYWLKDGQDAVAGSNWRRLYSHLATASID
PADSGNYSCVVGNKSGDVKHVTYMVNVLEHASISKGLHDQKVSLGATVHFTCDVHGNPAPNRTWFHNAQP
IHPSSRHLTEGNVLKITRVVMEDSGLYQCVADNGIGFMQSTGRLQIEQDSGWKPVIVTAPANIEVMDGDF
VTLSCNATGVPVPVIHWYGRHGLITSHPSQVLRSKPRKSHLFRPGDLDLEPVYLIMSQAGSSSLSIQAVT
LEHAGKYTCEATNKHGSTQSEAFLTVVPFETNTKAESVTPSEASQNDERDPQDGSESSLLNLFPVKVHPS
GVELPAERNASVPDAPNILSPPQTHMPDTYNLVWRAGRDGGMPINAYFVKYRKLDDGSGAVGSWHTVRVP
GSENELHLTELEPSSLYEVLMVARSAVGEGQPAMLTFRTSKEKMASSKNTQASFPPVGVPKRPVTAEASN
SNFGVVLTDSSRHSGVPEAPDRPTISMASETSVYVTWIPRANGGSPITAFKVEYKRMRTSDWLVAAEDIP
PSKLSVEVRSLEPGSIYKFRVIAINHYGESFRSSASRPYQVAGFPNRFSNRPITGPHIAYTEAVSDTQIM
LKWTYVPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHTIGHLQPETSYDIKMQCFNEGGESE
FSNVMICETKVKRVPGASDYPVKELSTPPSSSGNAGNVGPATSPARSSDMLYLIVGCVLGVMVLILMVFI
ALCLWKSRQQSTIQKYDPPGYLYQGSEINGQMVEYTTLSGAARINGSVHGGFLSNGCSHLHHKGPSGVNG
TLSGNINGGLYSAHTNSLTRACVEFEHPHHLVNSGGVYTAVPQMDPLECINCRNCRNNNRCFTKTNSPLP
VVPVVASYPQGGLEMKPLNAMKVPVCPASTVPDHGQLPDDCVKDSVAPIPTQHTCCQDNISDINSDSTED
TAEFSRGDSSGHSEAEDKVFSWNPLILSPVLEDCGEKTARSPPGPPLDGLSVVLQQAQET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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