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Report for CCDS24128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24128.1 Public Mus musculus 10 Ntn4 23 108 98 CCDS HistoryNCBI Gene:57764Re-query CCDS DB by CCDS ID:24128.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020204.4 ENSMUSP00000020204.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020204.4Link to Ensembl Protein Viewer:ENSMUSP00000020204.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020204Re-query CCDS DB by Protein ID:ENSMUSP00000020204
Original member Current member NCBI NM_021320.3 NP_067295.2 Accepted alive Link to Nucleotide Sequence:NM_021320.3Link to Protein Sequence:NP_067295.2Re-query CCDS DB by Nucleotide ID:NM_021320Re-query CCDS DB by Protein ID:NP_067295Link to BLAST:NP_067295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067295.2 628 Q9JI33 628 100% 0 0

Chromosomal Locations for CCDS 24128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93641454 93641508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93644471 93645000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93682418 93682696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93707278 93707404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93710478 93710666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93733607 93733820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93734173 93734288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93738884 93738952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93741051 93741221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93745717 93745853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGGGAGCTGCGCACGGCTGCTGCTGCTCTGGGGCTGCTCCGCGGTGGCCGCAGGCTTGAATGGAGTAG
CCGGAGCGAACTCCCGCTGTGAGAAAGCATGCAACCCTCGCATGGGAAACTTGGCTTTGGGAAGAAAGCT
CCGGGCAGACACAATGTGTGGCCAGAACGCCACCGAACTCTTCTGCTTCTACAGTGAGAATGCTGACCTC
ACTTGCCGGCAGCCCAAGTGTGATAAATGCAACGCTGCCCATTCTCACCTGGCTCACCCACCCTCTGCCA
TGGCAGACTCATCCTTCAGGTTTCCCCGGACATGGTGGCAGTCTGCAGAGGATGTGCACAGGGAAAAGAT
TCAGCTAGACCTGGAAGCAGAATTCTACTTCACTCACCTAATTATGGTGTTCAAGTCTCCCAGGCCTGCA
GCCATGGTGCTGGACCGGTCCCAGGACTTTGGGAAGACCTGGAAGCCTTACAAGTACTTTGCAACAAACT
GCTCGGCTACTTTTGGCCTGGAAGATGATGTTGTCAAGAAGGGAGCTATTTGCACGTCTAGATACTCAAA
TCCTTTCCCGTGCACCGGAGGAGAGGTTATTTTCAGAGCCCTGTCACCACCATACGACATAGAAAACCCT
TACAGTGCCAAAGTGCAGGAGCAGCTGAAGATCACCAACCTCCGAGTGCGGCTGCTCAAGCGACAGTCCT
GCCCTTGTCAGATAAACGACCTGAACGCAAAACCTCACCATTTTATGCACTACGCAGTCTATGACTTCAT
CGTCAAGGGCAGCTGCTTCTGCAACGGCCACGCTGACCAGTGCTTACCTGTGGAGGGCTTCAGACCCATC
AAGGCCCCGGGAGCGTTCCACGTGGTCCACGGGAGGTGTATGTGTAAGCACAACACAGCAGGCAGCCACT
GCCAGCACTGTGCACCATTGTACAATGACCGGCCCTGGGAGGCAGCGGACGGCAGAACAGGGGCTCCTAA
CGAATGCAGAACTTGCAAGTGCAATGGGCACGCGGACACCTGTCACTTCGACGTCAACGTGTGGGAGGCG
TCGGGGAACCGCAGCGGCGGTGTCTGCAACAACTGTCAGCACAACACTGAGGGTCAGCACTGTCAACGCT
GTAAGCCCGGTTTCTACCGCGACCTCAGAAGACCCTTCTCTGCCCCTGACGCTTGCAAAGCGTGTTCCTG
CCACCCGGTTGGATCGGCGATCCTTCCTTTCAGCTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGC
CCCTGCAAGCCTGGGGTGGCGGGGCCACATTGCGACAGATGCATGGTGGGATACTGGGGCTTTGGAGACT
ACGGCTGCAGACCTTGCGATTGTGCGGGGAGCTGCGACCCGCTCACGGGAGACTGCATCAGCAGTAACGC
TGATGTAGACTGGTACCACGAAGTCCCCGCCTTTCACTCGATGCACAATAAGAGTGAGCCCAGCTGGGAA
TGGGAGGATGAGCAAGGATTTTCTGCCCTCCGACACTCAGGTAAATGTGAATGTAAGGAACAGGTGTTAG
GAAACCCCAAAGCCTTCTGTGGAATGAAGTATTCATATGTGTTAAAAATCAAGATCTTATCAGCCCACGA
CAAAGGCTCCCATGCCGAAGTCAATGTGAAGATTAAGAAAGTCTTAAAGTCCACCAAACTGAAGATCTTA
CGAGGCAAGAGAACGCTATACCCAGAGTCCTGGACTAACAGAGGCTGCACCTGTCCAATCCTCAATCCAG
GATTGGAGTACCTGGTCGCTGGCCACGAGGACGTAAGAACAGGCAAATTAATTGTGAATATGAAAAGCTT
TGTCCAGCACTGGAAACCAGCTCTTGGCAGAAGAGTCATGCACATCTTAAAAAGAGACTGCGTGTAG

Translation (628 aa):
MGSCARLLLLWGCSAVAAGLNGVAGANSRCEKACNPRMGNLALGRKLRADTMCGQNATELFCFYSENADL
TCRQPKCDKCNAAHSHLAHPPSAMADSSFRFPRTWWQSAEDVHREKIQLDLEAEFYFTHLIMVFKSPRPA
AMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALSPPYDIENP
YSAKVQEQLKITNLRVRLLKRQSCPCQINDLNAKPHHFMHYAVYDFIVKGSCFCNGHADQCLPVEGFRPI
KAPGAFHVVHGRCMCKHNTAGSHCQHCAPLYNDRPWEAADGRTGAPNECRTCKCNGHADTCHFDVNVWEA
SGNRSGGVCNNCQHNTEGQHCQRCKPGFYRDLRRPFSAPDACKACSCHPVGSAILPFSSVTFCDPSNGDC
PCKPGVAGPHCDRCMVGYWGFGDYGCRPCDCAGSCDPLTGDCISSNADVDWYHEVPAFHSMHNKSEPSWE
WEDEQGFSALRHSGKCECKEQVLGNPKAFCGMKYSYVLKIKILSAHDKGSHAEVNVKIKKVLKSTKLKIL
RGKRTLYPESWTNRGCTCPILNPGLEYLVAGHEDVRTGKLIVNMKSFVQHWKPALGRRVMHILKRDCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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