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Report for CCDS2129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2129.1 Public Homo sapiens 2 PTPN4 24 110 108 CCDS HistoryNCBI Gene:5775Re-query CCDS DB by CCDS ID:2129.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263708.7 ENSP00000263708.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263708.7Link to Ensembl Protein Viewer:ENSP00000263708.2Re-query CCDS DB by Nucleotide ID:ENST00000263708Re-query CCDS DB by Protein ID:ENSP00000263708
Original member Current member NCBI NM_002830.4 NP_002821.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002830.4Link to Protein Sequence:NP_002821.1Re-query CCDS DB by Nucleotide ID:NM_002830Re-query CCDS DB by Protein ID:NP_002821Link to BLAST:NP_002821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002821.1 926 P29074 926 100% 0 0

Chromosomal Locations for CCDS 2129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119809854 119809991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119862536 119862643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119877323 119877365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119877464 119877542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119881786 119881830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119882097 119882149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119882503 119882623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119885795 119885882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119900718 119900806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119915179 119915242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119920069 119920241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119926598 119926666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119932424 119932549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119934800 119934958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119945081 119945240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119946341 119946424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119946518 119946574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119951973 119952129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119955157 119955323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119956844 119956934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119957016 119957077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119960807 119960953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119962616 119962744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119965497 119965645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119967837 119967972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119976984 119977070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGACCTCACGTTTCCGATTGCCTGCTGGCAGAACCTACAATGTACGAGCATCAGAGTTGGCCCGAGACA
GACAGCATACTGAAGTGGTTTGCAACATCCTTCTTCTGGATAACACTGTACAAGCTTTCAAAGTCAATAA
ACATGATCAGGGGCAAGTCTTGTTGGATGTCGTCTTCAAGCATCTAGATTTGACTGAGCAGGACTATTTT
GGTTTACAGTTGGCTGATGATTCCACAGATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGAAGC
AGCTAAAGAGAGGATCTCCTTACAGTTTGAACTTTAGAGTCAAATTTTTTGTAAGTGACCCCAACAAGTT
ACAAGAAGAATATACAAGGTACCAGTATTTTTTGCAAATTAAACAAGACATTCTTACTGGAAGATTACCC
TGTCCTTCTAATACTGCTGCCCTTTTAGCTTCATTTGCTGTTCAGTCTGAACTTGGAGACTACGATCAGT
CAGAGAACTTGTCAGGCTACCTCTCAGATTATTCTTTCATTCCTAATCAACCTCAAGATTTTGAAAAAGA
AATTGCAAAATTACATCAGCAACACATAGGCTTATCTCCTGCAGAAGCAGAATTTAATTACCTAAACACA
GCACGTACCTTAGAACTCTATGGAGTTGAATTCCACTATGCAAGGGATCAGAGTAACAATGAAATTATGA
TTGGAGTGATGTCAGGAGGAATTCTGATTTATAAGAACAGGGTACGAATGAATACCTTTCCATGGTTGAA
GATTGTAAAAATTTCTTTTAAGTGCAAACAGTTTTTTATTCAACTTAGAAAAGAATTGCATGAATCTAGA
GAAACATTATTGGGATTTAATATGGTGAATTACAGAGCATGTAAAAATTTGTGGAAAGCATGTGTAGAAC
ATCACACATTCTTCCGTTTGGACAGACCACTTCCACCTCAAAAGAATTTTTTTGCACATTATTTTACATT
AGGTTCAAAATTCCGGTACTGTGGGAGAACTGAAGTCCAATCAGTTCAGTATGGCAAAGAAAAGGCAAAT
AAAGACAGGGTATTTGCAAGATCCCCAAGTAAGCCCTTGGCACGGAAATTAATGGATTGGGAAGTAGTAA
GCAGAAATTCAATATCTGATGACAGGTTAGAAACACAAAGTCTTCCATCACGATCTCCACCGGGAACTCC
TAATCATCGAAATTCTACATTCACGCAGGAAGGAACCCGGTTACGACCATCTTCAGTTGGTCATTTGGTA
GACCATATGGTTCATACTTCCCCAAGCGAAGTGTTTGTAAATCAGAGATCTCCGTCATCAACACAAGCTA
ATAGCATTGTTCTGGAATCATCACCATCACAAGAGACCCCTGGAGATGGGAAGCCTCCAGCTTTACCACC
CAAACAGTCAAAGAAAAACAGTTGGAACCAAATTCATTATTCACATTCGCAACAAGATCTAGAAAGTCAT
ATTAATGAAACATTTGATATTCCATCTTCTCCTGAAAAACCCACTCCTAATGGTGGTATTCCACATGATA
ATCTTGTCCTAATCAGAATGAAACCTGATGAAAATGGGAGGTTTGGATTCAATGTAAAGGGAGGATATGA
TCAGAAGATGCCTGTGATTGTGTCTCGAGTAGCACCAGGAACACCTGCTGACCTCTGTGTCCCTAGACTG
AATGAAGGGGACCAAGTTGTACTGATCAATGGTCGGGACATTGCAGAACACACTCATGATCAGGTTGTGC
TGTTTATTAAAGCTAGTTGTGAGAGACATTCTGGGGAACTCATGCTTCTAGTTCGACCTAATGCTGTATA
TGATGTAGTGGAAGAAAAGCTAGAAAATGAGCCAGATTTCCAGTATATTCCTGAGAAAGCCCCACTAGAT
AGTGTGCATCAGGATGACCATTCCCTGCGGGAGTCAATGATCCAGCTAGCTGAGGGGCTTATCACTGGAA
CAGTCCTGACACAGTTTGATCAACTGTATCGGAAAAAACCTGGAATGACAATGTCCTGTGCCAAATTACC
TCAGAATATTTCCAAAAATAGATACAGAGATATTTCGCCTTATGATGCCACACGGGTCATTTTAAAAGGT
AATGAAGACTACATCAATGCGAACTATATAAATATGGAAATTCCTTCTTCCAGCATTATAAATCAGTACA
TTGCTTGTCAAGGGCCATTACCACACACTTGTACAGATTTTTGGCAGATGACTTGGGAACAAGGCTCCTC
TATGGTTGTAATGTTGACCACACAAGTTGAACGTGGCAGAGTTAAATGTCACCAATATTGGCCAGAACCC
ACAGGCAGTTCATCTTATGGATGCTACCAAGTTACCTGCCACTCTGAAGAAGGAAACACTGCCTATATCT
TCAGGAAGATGACCCTATTTAACCAAGAGAAAAATGAAAGTCGTCCACTCACTCAGATCCAGTACATAGC
CTGGCCTGACCATGGAGTCCCTGATGATTCGAGTGACTTTCTAGATTTTGTTTGTCATGTACGAAACAAG
AGGGCTGGCAAGGAAGAACCCGTTGTTGTCCATTGCAGTGCTGGAATCGGAAGAACTGGGGTTCTTATTA
CTATGGAAACAGCCATGTGTCTCATTGAATGCAATCAGCCAGTTTATCCACTAGATATTGTAAGAACAAT
GAGAGATCAGCGAGCCATGATGATCCAAACACCTAGTCAATACAGATTTGTATGTGAAGCTATTTTGAAA
GTTTATGAAGAAGGCTTTGTTAAACCCTTAACAACATCAACAAATAAATAA

Translation (926 aa):
MTSRFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFKVNKHDQGQVLLDVVFKHLDLTEQDYF
GLQLADDSTDNPRWLDPNKPIRKQLKRGSPYSLNFRVKFFVSDPNKLQEEYTRYQYFLQIKQDILTGRLP
CPSNTAALLASFAVQSELGDYDQSENLSGYLSDYSFIPNQPQDFEKEIAKLHQQHIGLSPAEAEFNYLNT
ARTLELYGVEFHYARDQSNNEIMIGVMSGGILIYKNRVRMNTFPWLKIVKISFKCKQFFIQLRKELHESR
ETLLGFNMVNYRACKNLWKACVEHHTFFRLDRPLPPQKNFFAHYFTLGSKFRYCGRTEVQSVQYGKEKAN
KDRVFARSPSKPLARKLMDWEVVSRNSISDDRLETQSLPSRSPPGTPNHRNSTFTQEGTRLRPSSVGHLV
DHMVHTSPSEVFVNQRSPSSTQANSIVLESSPSQETPGDGKPPALPPKQSKKNSWNQIHYSHSQQDLESH
INETFDIPSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRL
NEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEEKLENEPDFQYIPEKAPLD
SVHQDDHSLRESMIQLAEGLITGTVLTQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVILKG
NEDYINANYINMEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEP
TGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCHVRNK
RAGKEEPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILK
VYEEGFVKPLTTSTNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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