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Report for CCDS26688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26688.1 Public Mus musculus 13 Jmy 23 108 98 CCDS HistoryNCBI Gene:57748Re-query CCDS DB by CCDS ID:26688.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065537.8 ENSMUSP00000070339.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065537.8Link to Ensembl Protein Viewer:ENSMUSP00000070339.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065537Re-query CCDS DB by Protein ID:ENSMUSP00000070339
Original member Current member NCBI NM_021310.3 NP_067285.2 Accepted alive Link to Nucleotide Sequence:NM_021310.3Link to Protein Sequence:NP_067285.2Re-query CCDS DB by Nucleotide ID:NM_021310Re-query CCDS DB by Protein ID:NP_067285Link to BLAST:NP_067285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067285.2 983 Q9QXM1-1 983 99.6948% 0 3

Chromosomal Locations for CCDS 26688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 93439442 93439749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93441015 93441621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93442586 93442681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93452807 93452893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93453388 93453575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93453928 93454093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93459620 93459789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93464567 93464717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93472621 93472794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93498302 93499306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2952 nt):
ATGTCGTTCGCGCTGGAGGAGACACTCGAGTCCGACTGGGTGGCGGTGCGGCCCCACGTATTCGACGAGC
GCGAGAAGCACAAGTTTGTGTTCATTGTGGCCTGGAACGAGATCGAAGGCAAGTTTGCTATAACCTGTCA
CAACCGGACGGCCCAGAGACAGAGGAGCGGTTCCCGGGAACAGGCGGGGACGCCCGCGTCTGATGGGAGT
CGCGGTCCGGGCAGCCCCGCGGCCAGGGGTCGGTCAGAGGCCGCTGCCTCTGCTACAGCAGCGCTCCGGA
GTCCCGGGCCACGGAAAAGCCAGGCCTGGGCCGAGGGCGGCTCTCCGCGCAGCGCGCGCAGCCTGAAGGG
GGATCCTCCTCGGGGTCCCGCGGGCAGAGGACCGGAGAGTCCTCTCCGTAGCCCCGCGCGGGCTAAGGCC
AGCCCGCTCCGCAGAAGCGCCGAATCCCGAGATGCGACCGCCAGTGCCACGCCAGCCCCGCCGGCGCCCC
CGGTGCCCCCGGTGTCGTCGGTGCGGGTGGTGAGTGCCTCCGGGGCGGTCTCCGAGGAGATCGAGGTCCT
GGAAATGGTGAGGGAGGACGAGGCGCCACAGCCGCTCCCGGACTCGGAGCAGCCGCCGTCTGCCGCGGAG
CTGGAGTCTCCGGCCGAAGAATGCAGCTGGGCCGGGCTTTTCTCCTTCCAGGATCTGCGAGCCGTGCATC
AGCAGCTGTGCTCGGTAAACTCCCAGCTGGAGCCGTGTCTGCCGGTGTTCCCCGAAGAGCCGTCAGGCAT
GTGGACGGTGCTGTTTGGGGGCGCCCCCGAGATGACCGAGCAGGAGATCGACGCTCTATGTTACCAACTC
CAGGTATACCTGGGCCACGGCCTGGACACGTGTGGCTGGAAGATCCTTTCTCAGGTTCTTTTCACCGAGA
CGGATGATCCGGAGGAGTATTACGAAAGCCTCAGCGAGCTGCGGCAGAAGGGCTATGAAGAGGTGCTTCA
GCGGGCCAGGAGGCGCATCCAGGAGCTCTTGGACAAGCACAAGACTATAGAAAGCATGGTAGAGCTTTTG
GACTTGTATCAGATGGAGGATGAAGCCTACAGCAGCCTTGCAGAGGCCACAACTGAACTCTACCAGTATT
TACTTCAGCCATTCCGAGACATGCGAGAACTGGCCATGCTACGAAGACAGCAGATCAAGATTTCCATGGA
GAATGATTATTTGGGCCCTCGAAGAATTGAGAGTCTACAGAAAGAAGATGCTGACTGGCAGCGGAAAGCT
CACATGGCTGTTTTGTCTATTCAGGATCTCACCGTCAAATATTTTGAAATAACAGCAAAAGCTCAGAAAG
CTGTGTATGATCGGATGCGAGCAGATCAGAAGAAATTTGGCAAAGCATCGTGGGCAGCAGCTGCTGAGCG
AATGGAAAAACTCCAGTATGCAGTTTCTAAAGAGACTTTGCAGATGATGAGAGCTAAAGAAATTTGTCTG
GAACAGAAGAAACATGCACTAAAAGAAGAGATGCAAAGCTTACAGGGTGGTACAGAAGCTATAGCTCGAT
TGGATCAGCTGGAATCTGACTACTATGATCTGCAACTTCAGTTGTATGAAGTACAGTTTGAAATCTTGAA
GTGTGAAGAGTTGTTATTAACTGCACAGCTGGAGAGCATCAAGAGACTTATATCAGAAAAGAGAGATGAA
GTGGTGTACTACGACACTTACGAAAGCATGGAGGCCATGCTGGAGAAGGAAGAGATGGCAGCGTCTGTGC
ACGCCCAGAGGGAAGAGCTACAGAAACTGCAGCAGAAGGCACGCCAGCTGGAAGCAAGAAGGGGCCGTGT
CTCAGCCAAGAAAGCCTACCTCAGAAATAAAAAAGAAATTTGCATTGCAAAACACCATGAGAAGTTCCAG
CAGCGTTTTCAGAGTGAAGATGAATATAGAGCCCATCATACAATACAAATAAAGAGAGACAAATTGCATG
ATGAAGAGGAAAGAAAAAGTGCCTGGGTTAGCCAAGAGAGACAGAGGACACTGGATAGACTTCGAACATT
TAAGCAGAGGTACCCCGGGCAAGTCATCCTTAAGTCGACCAGATTACGAGTGGCGCATTCAAGAAGAAAA
AGCACAGCAAGCCCTGTGCCCTGTGAGGAGCAGTGTCACTCTCTGCCAACAGTGCTGCAGGGGCAGGAGA
AGACAGAGGTGGGAGGAGGAGGAAGCCAGCTTGGGCCTTCACAGACAGCAGAACCCCAGAGCCTTGTCCA
ACTTGAAGACACTTCATCAGAACAACTTGAATCCACCTCATTACCTCCTCGTGCTGTCGTCAGCTCTGAA
CTGCCTCCTCCACAGTCAGCTCCACTGTTGACTAGTATTGACCCCAAACCGTGTTCTGTTACTATAGATC
CTCTCCCACCCCCTCTTCCTCCAACACCTCCCCCTCCCCCACCCCCACCCCCACCTCCACCCCCACCCCT
GCCTGTTGCAAAGGACAATGGGGCCTCCACCACTGCAGAGACACTGGAGAAAGATGCACTTAGGACGGAG
GGCAATGAGAGGAGCATCCCAAAGTCGGCCAGTGCCCCCGCAGCACACCTCTTTGATAGCAGCCAGCTGG
TCAGCGCACGGAAAAAGCTCAGAAAGACTGTGGAAGGGCTGCAGAGGAGGAGAGTGAGTTCACCCATGGA
TGAAGTGTTAGCATCCTTGAAGCGTGGTAGCTTTCATCTGAAAAAGGTTGAACAGCGGACTCTGCCTCCT
TTTCCTGATGAAGATGATAGTAATAATATTTTGGCGCAGATAAGGAAAGGGGTAAAGTTGAAGAAGGTTC
AGAAGGAAGTTTTGAGAGAATCCTTCACACTTCTGCCTGATACCGACCCTTTGACACGGAGTATCCACGA
AGCTCTAAGAAGAATCAAAGAAGCGTCCCCAGAGTCAGAGGATGAGGAAGAGGCTTTGCCGTGCACAGAC
TGGGAGAACTAG

Translation (983 aa):
MSFALEETLESDWVAVRPHVFDEREKHKFVFIVAWNEIEGKFAITCHNRTAQRQRSGSREQAGTPASDGS
RGPGSPAARGRSEAAASATAALRSPGPRKSQAWAEGGSPRSARSLKGDPPRGPAGRGPESPLRSPARAKA
SPLRRSAESRDATASATPAPPAPPVPPVSSVRVVSASGAVSEEIEVLEMVREDEAPQPLPDSEQPPSAAE
LESPAEECSWAGLFSFQDLRAVHQQLCSVNSQLEPCLPVFPEEPSGMWTVLFGGAPEMTEQEIDALCYQL
QVYLGHGLDTCGWKILSQVLFTETDDPEEYYESLSELRQKGYEEVLQRARRRIQELLDKHKTIESMVELL
DLYQMEDEAYSSLAEATTELYQYLLQPFRDMRELAMLRRQQIKISMENDYLGPRRIESLQKEDADWQRKA
HMAVLSIQDLTVKYFEITAKAQKAVYDRMRADQKKFGKASWAAAAERMEKLQYAVSKETLQMMRAKEICL
EQKKHALKEEMQSLQGGTEAIARLDQLESDYYDLQLQLYEVQFEILKCEELLLTAQLESIKRLISEKRDE
VVYYDTYESMEAMLEKEEMAASVHAQREELQKLQQKARQLEARRGRVSAKKAYLRNKKEICIAKHHEKFQ
QRFQSEDEYRAHHTIQIKRDKLHDEEERKSAWVSQERQRTLDRLRTFKQRYPGQVILKSTRLRVAHSRRK
STASPVPCEEQCHSLPTVLQGQEKTEVGGGGSQLGPSQTAEPQSLVQLEDTSSEQLESTSLPPRAVVSSE
LPPPQSAPLLTSIDPKPCSVTIDPLPPPLPPTPPPPPPPPPPPPPPLPVAKDNGASTTAETLEKDALRTE
GNERSIPKSASAPAAHLFDSSQLVSARKKLRKTVEGLQRRRVSSPMDEVLASLKRGSFHLKKVEQRTLPP
FPDEDDSNNILAQIRKGVKLKKVQKEVLRESFTLLPDTDPLTRSIHEALRRIKEASPESEDEEEALPCTD
WEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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