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Report for CCDS46628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46628.1 Public Homo sapiens 20 COL20A1 24 110 108 CCDS HistoryNCBI Gene:57642Re-query CCDS DB by CCDS ID:46628.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46628.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358894.11 ENSP00000351767.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358894.11Link to Ensembl Protein Viewer:ENSP00000351767.6Re-query CCDS DB by Nucleotide ID:ENST00000358894Re-query CCDS DB by Protein ID:ENSP00000351767
Original member Current member NCBI NM_020882.4 NP_065933.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020882.4Link to Protein Sequence:NP_065933.2Re-query CCDS DB by Nucleotide ID:NM_020882Re-query CCDS DB by Protein ID:NP_065933Link to BLAST:NP_065933.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065933.2 1284 Q9P218-1 1284 100% 0 0

Chromosomal Locations for CCDS 46628.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63295108 63295189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63297910 63298020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63305417 63305560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63305881 63306039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63307490 63307648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63307971 63308090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63308542 63308706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63309333 63309497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63309758 63309915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63310381 63310510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63311394 63311539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63311625 63311748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63311916 63312055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63312420 63312549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63312792 63312934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63313117 63313249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63313743 63313891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63314072 63314201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63315404 63315439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63316553 63316691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63319058 63319200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63319487 63319596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63320039 63320197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63320291 63320368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63321013 63321099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63322058 63322111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63325441 63325494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63325668 63325721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63326096 63326149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63326752 63326823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63327952 63327987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63328079 63328127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63328331 63328498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63329585 63329658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3855 nt):
ATGAGCTCCGGAGACCCTGCACACCTCGGCCTCTGCCTCTGGCTGTGGCTGGGCGCCACCCTGGGAAGAG
AGCAAGTTCAAGCAAGCGGTCTCCTGAGGCTGGCTGTGCTGCCTGAGGACCGGCTGCAGATGAAGTGGAG
AGAGTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGCCCATGGCAGGGGACTCGGAACAGGAG
GTGATACTGACCACCAAGACCCCTAAGGCCACAGTGGGGGGCCTGAGCCCCTCCAAGGGCTACACCTTGC
AGATCTTCGAGCTCACTGGCTCTGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGATTGAGGATCTGAA
GAGTAGCTCCCTGGACAGGAGCAGCCAGAGGCCCCTCGGCTCTGGAGCCCCGGAGCCCACCCCCTCCCAC
ACGGGGAGCCCAGACCCTGAGCAGGCTTCTGAGCCCCAAGTTGCCTTCACACCAAGCCAGGATCCGCGCA
CTCCTGCCGGCCCCCAGTTCCGCTGCCTGCCCCCCGTGCCTGCTGACATGGTCTTCCTGGTGGACGGGTC
CTGGAGCATTGGCCACAGTCACTTCCAGCAGGTCAAGGACTTCCTGGCCAGTGTCATCGCACCCTTTGAA
ATCGGGCCGGATAAGGTCCAAGTAGGCCTGACTCAGTACAGCGGGGATGCTCAGACTGAGTGGGACCTGA
ACTCCCTCAGCACCAAGGAACAGGTGCTGGCAGCTGTGCGCCGCCTCCGCTACAAGGGGGGGAACACGTT
CACAGGCCTTGCCCTGACCCACGTGCTGGGGCAGAACCTGCAGCCGGCGGCTGGCCTCCGTCCAGAGGCA
GCCAAGGTGGTGATTCTGGTGACGGACGGCAAGTCCCAGGACGATGTGCACACTGCTGCCCGTGTCCTCA
AGGACCTGGGCGTGAACGTCTTCGCTGTGGGTGTGAAGAACGCCGATGAGGCTGAGCTGAGGCTCCTGGC
GTCCCCGCCGAGGGACATCACCGTCCACAGCGTGCTGGACTTCCTGCAGCTCGGCGCGCTGGCTGGCCTG
CTCAGCCGTCTCATCTGCCAGAGGCTCCAGGGTGGGAGCCCGCGGCAGGGCCCAGCAGCGGCTCCAGCCC
TGGACACCCTCCCTGCCCCCACCAGCCTGGTCCTGAGCCAGGTGACCTCCTCCAGCATCCGCCTGTCCTG
GACTCCAGCCCCCCGGCACCCCCTCAAGTATCTGATCGTTTGGCGAGCCTCTAGAGGTGGCACCCCCAGG
GAGGTGGTGGTGGAGGGACCCGCCGCCTCCACGGAGCTGCACAACCTGGCCTCCCGCACAGAGTACCTGG
TCTCCGTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGGCCTGGTGACCACAGCACCTCT
GCCTCCGCCCCGGGCGCTGACCCTGGCCGCAGTGACGCCCAGAACCGTCCACCTCACCTGGCAGCCCTCG
GCCGGGGCCACCCACTACCTGGTGCGATGTTCTCCTGCTTCCCCCAAGGGTGAAGAGGAGGAGCGAGAGG
TGCAGGTCGGGCGGCCCGAGGTGCTGCTGGATGGCCTGGAACCTGGCAGGGACTATGAGGTCTCGGTGCA
GAGCCTGCGAGGCCCTGAGGGCAGCGAGGCCCGGGGCATCCGTGCCAGGACCCCCACCCTGGCCCCCCCG
AGACACCTGGGCTTCTCAGACGTGAGCCACGACGCGGCACGAGTGTTCTGGGAGGGTGCCCCGAGGCCTG
TGCGCCTGGTCAGGGTCACCTATGTGTCCAGCGAGGGTGGACACTCGGGGCAGACAGAGGCTCCTGGGAA
CGCCACCTCGGCCACGCTGGGGCCTCTCTCTTCCTCCACCACCTACACTGTCCGTGTCACCTGCCTCTAC
CCTGGGGGTGGCTCCTCTACGCTGACTGGCCGGGTGACCACCAAGAAAGCTCCCAGCCCAAGCCAGCTGT
CCATGACGGAGCTGCCAGGGGATGCAGTCCAGCTGGCGTGGGTGGCCGCAGCCCCGTCTGGCGTGCTTGT
CTACCAGATCACGTGGACGCCCCTGGGAGAGGGGAAGGCTCACGAGATCTCTGTCCCAGGGAACCTCGGC
ACGGCCGTCCTGCCTGGCCTAGGGAGGCACACAGAGTACGACGTCACCATCTTGGCCTACTACAGGGACG
GGGCCCGCAGTGACCCTGTGTCCCTCCGCTATACCCCCTCCACGGTGAGCAGGAGCCCACCCTCCAACCT
GGCCCTGGCCTCGGAGACCCCCGACAGCCTGCAGGTCAGCTGGACGCCCCCGCTTGGCCGCGTGCTCCAT
TACTGGCTCACCTACGCCCCCGCCTCTGGCTTGGGACCCGAGAAATCCGTCTCTGTGCCAGGAGCCAGGA
GCCACGTGACACTGCCCGACCTGCAGGCAGCCACGAAGTACAGGGTCCTGGTCTCAGCTATCTATGCAGC
AGGCAGGAGTGAGGCTGTGTCTGCCACGGGCCAGACAGCCTGCCCAGCCCTCCGCCCTGACGGCTCCCTC
CCAGGGTTTGACCTGATGGTGGCCTTCAGCCTGGTGGAAAAGGCTTATGCGTCCATCCGGGGCGTGGCCA
TGGAGCCCTCTGCCTTCGGTGGGACCCCGACCTTCACGCTCTTCAAGGACGCCCAGCTGACAAGACGGGT
CAGTGACGTCTACCCAGCCCCCCTACCTCCAGAGCACACCATCGTCTTCCTTGTGCGCCTACTTCCCGAG
ACACCCCGTGAGGCCTTCGCGCTGTGGCAGATGACAGCCGAGGACTTCCAGCCCCTCCTTGGGGTTCTGC
TGGATGCCGGGAAGAAGTCCCTGACCTACTTCCACCGTGACCCCAGGGCTGCCTTGCAGGAGGCCACCTT
CGACCCGCAGGAAGTGAGGAAGATTTTCTTCGGGAGCTTCCACAAGGTGCACGTGGCTGTGGGCCGCTCC
AAGGTCAGGCTCTATGTGGACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGGCAGCCCACCCG
CTGCGGGCTTCGTCACGCTGGGGAGGCTGGCCAAGGCCAGGGGCCCCCGGAGCAGTTCGGCCGCGTTTCA
GCTCCAGATGCTGCAGATCGTGTGCAGTGACACCTGGGCCGATGAGGACCGGTGCTGTGAGCTCCCTGCC
TCGAGGGATGGAGAGACCTGCCCCGCCTTCGTGTCTGCCTGTTCCTGTTCCTCAGAGACCCCTGGGCCCC
CAGGACCTCAAGGACCCCCAGGCCTCCCTGGGAGGAATGGCACCCCAGGAGAGCAGGGCTTCCCAGGGCC
CAGGGGTCCACCAGGGGTCAAAGGAGAGAAGGGAGACCATGGGCTTCCAGGCTTGCAGGGCCACCCCGGC
CACCAGGGCATCCCCGGGAGAGTTGGCCTCCAGGGACCAAAGGGAATGAGAGGCCTGGAGGGAACTGCTG
GCCTGCCTGGACCCCCTGGCCCCAGGGGGTTCCAGGGCATGGCAGGGGCCAGGGGCACTAGTGGAGAGCG
AGGACCTCCAGGGACCGTGGGGCCCACAGGACTGCCAGGGCCCAAAGGGGAACGAGGAGAGAAGGGCGAG
CCGCAGTCCCTTGCCACCCTCTACCAGCTTGTGAGCCAGGCCTCACACGTGTCAAAGTTCGACTCCTTCC
ACGAGAACACCAGGCCCCCCATGCCCATCTTGGAGCAGAAGCTGGAGCCGGGCACTGAGCCCCTGGGGTC
CCCTGGCACCCGCAGCAAGGCCCTGGTTCCTGGAGAATGGGGGCGTGGTGGCCGCCACCTTGAGGGCAGA
GGGGAGCCTGGAGCTGTTGGTCAGATGGGCAGCCCTGGGCAGCAGGGGGCTAGCACCCAGGGCCTCTGGG
AGTGA

Translation (1284 aa):
MSSGDPAHLGLCLWLWLGATLGREQVQASGLLRLAVLPEDRLQMKWRESEGSGLGYLVQVKPMAGDSEQE
VILTTKTPKATVGGLSPSKGYTLQIFELTGSGRFLLARREFVIEDLKSSSLDRSSQRPLGSGAPEPTPSH
TGSPDPEQASEPQVAFTPSQDPRTPAGPQFRCLPPVPADMVFLVDGSWSIGHSHFQQVKDFLASVIAPFE
IGPDKVQVGLTQYSGDAQTEWDLNSLSTKEQVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEA
AKVVILVTDGKSQDDVHTAARVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGL
LSRLICQRLQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWRASRGGTPR
EVVVEGPAASTELHNLASRTEYLVSVFPIYEGGVGEGLRGLVTTAPLPPPRALTLAAVTPRTVHLTWQPS
AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTLAPP
RHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSATLGPLSSSTTYTVRVTCLY
PGGGSSTLTGRVTTKKAPSPSQLSMTELPGDAVQLAWVAAAPSGVLVYQITWTPLGEGKAHEISVPGNLG
TAVLPGLGRHTEYDVTILAYYRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLH
YWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPALRPDGSL
PGFDLMVAFSLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVYPAPLPPEHTIVFLVRLLPE
TPREAFALWQMTAEDFQPLLGVLLDAGKKSLTYFHRDPRAALQEATFDPQEVRKIFFGSFHKVHVAVGRS
KVRLYVDCRKVAERPLGEMGSPPAAGFVTLGRLAKARGPRSSSAAFQLQMLQIVCSDTWADEDRCCELPA
SRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPG
HQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGE
PQSLATLYQLVSQASHVSKFDSFHENTRPPMPILEQKLEPGTEPLGSPGTRSKALVPGEWGRGGRHLEGR
GEPGAVGQMGSPGQQGASTQGLWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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