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Report for CCDS71020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71020.1 Public Mus musculus 2 Sh3glb2 23 108 98 CCDS HistoryNCBI Gene:227700Re-query CCDS DB by CCDS ID:71020.1Re-query CCDS DB by GeneID:227700See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100215.10 ENSMUSP00000097788.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100215.10Link to Ensembl Protein Viewer:ENSMUSP00000097788.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100215Re-query CCDS DB by Protein ID:ENSMUSP00000097788
Original member Current member NCBI NM_001289709.1 NP_001276638.1 Accepted alive Link to Nucleotide Sequence:NM_001289709.1Link to Protein Sequence:NP_001276638.1Re-query CCDS DB by Nucleotide ID:NM_001289709Re-query CCDS DB by Protein ID:NP_001276638Link to BLAST:NP_001276638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276638.1 400 Q8R3V5-4 400 100% 0 0

Chromosomal Locations for CCDS 71020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30345320 30345427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30345699 30345939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346059 30346073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346353 30346453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346611 30346700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30347081 30347104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30348555 30348617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30350288 30350380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30350584 30350717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30354853 30354981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30355261 30355402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30359143 30359205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGGACTTCAACATGAAGAAGCTGGCGTCGGACGCGGGCATCTTCTTCACTCGGGCGGTGCAGTTCACAG
AGGAGAAGTTTGGCCAGGCTGAGAAGACGGAGCTTGACGCCCACTTTGAAAACCTCCTAGCTCGGGCAGA
CAGCACCAAGAACTGGACAGAGCGGATCCTGAGGCAGACCGAGGTGCTGCTGCAGCCCAACCCCAGTGCT
CGAGTGGAGGAGTTCCTATATGAGAAGCTGGACAGAAAGGTGCCCTCGAGAGTCACCAATGGGGAGCTGC
TGGCTCAGTACATGGCGGAGGCAGCCAGCGAGCTGGGCCCCAGCACTCCCTACGGGAAGACGCTGATCAA
GGTGTCAGAAGCTGAGAAGCGCCTCGGAGCAGCAGAGCGGGATTTCATTCACACTGCCTCCCTCAGCTTC
CTCACACCCCTGCGGAACTTCCTAGAGGGGGACTGGAAAACGATTTCGAAGGAGAGGCGGCTCCTGCAGA
ACCGGCGTCTTGACCTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCAGCCGAAGCCAAAGCCAC
GACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCGCTTTGG
AACGATGAAGTCGACAAGGCTGAGCAGGAGCTTCGAGTGGCGCAGACAGAGTTTGACCGGCAGGCAGAAG
TGACCCGTCTCCTGCTGGAGGGGATCAGCAGTACTCATGTGAACCACCTTCGCTGCCTCCATGAGTTCGT
CAAGTCTCAGACAACCTACTATGCACAGTGCTACCGCCACATGCTGGATCTGCAGAAACAGCTAGGCAGC
TCCCAGGGTGCCATATTTCCAGGCACCTTCGTGGGCACCACAGAGCCTGCCTCCCCACCCCTGAGCAGCA
CCTCACCTACCACCACTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGTCTTGGCCCCTCCAGAAGA
GGCAGCCCTCTGCCTGGAGGAGGTGGCTCCCCCAGCCAGTGGGACTCGAAAGGCCCGGGTGCTCTACGAC
TACGAGGCAGCTGACAGCAGTGAGCTGGCCCTGCTGGCTGATGAGCTCATCACTGTCTACAGCCTGCCAG
GCATGGATCCCGACTGGCTCATTGGTGAGAGAGGCAACAAGAAGGGCAAGGTTCCTGTCACCTACCTGGA
ACTTCTCAGCTAA

Translation (400 aa):
MDFNMKKLASDAGIFFTRAVQFTEEKFGQAEKTELDAHFENLLARADSTKNWTERILRQTEVLLQPNPSA
RVEEFLYEKLDRKVPSRVTNGELLAQYMAEAASELGPSTPYGKTLIKVSEAEKRLGAAERDFIHTASLSF
LTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATTVPDFQETRPRNYILSASASALW
NDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVKSQTTYYAQCYRHMLDLQKQLGS
SQGAIFPGTFVGTTEPASPPLSSTSPTTTAATMPVVPTGAVLAPPEEAALCLEEVAPPASGTRKARVLYD
YEAADSSELALLADELITVYSLPGMDPDWLIGERGNKKGKVPVTYLELLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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