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Report for CCDS31763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31763.1 Public Homo sapiens 12 KLHL42 24 110 108 CCDS HistoryNCBI Gene:57542Re-query CCDS DB by CCDS ID:31763.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31763.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381271.7 ENSP00000370671.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381271.7Link to Ensembl Protein Viewer:ENSP00000370671.2Re-query CCDS DB by Nucleotide ID:ENST00000381271Re-query CCDS DB by Protein ID:ENSP00000370671
Original member Current member NCBI NM_020782.2 NP_065833.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020782.2Link to Protein Sequence:NP_065833.1Re-query CCDS DB by Nucleotide ID:NM_020782Re-query CCDS DB by Protein ID:NP_065833Link to BLAST:NP_065833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065833.1 505 Q9P2K6 505 100% 0 0

Chromosomal Locations for CCDS 31763.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 27780331 27781202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27791708 27791901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 27797715 27798166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGTCGGCCGAGGAGATGGTGCAGATCCGCCTGGAGGACCGCTGCTACCCGGTGAGCAAGAGGAAGCTCA
TCGAGCAGAGCGACTACTTCCGCGCCCTCTACCGCTCCGGCATGCGCGAGGCCCTGAGCCAGGAGGCCGG
CGGCCCGGAGGTGCAGCAGCTGCGCGGCCTCAGCGCGCCGGGCCTGCGGCTGGTGCTGGACTTCATCAAC
GCCGGCGGGGCCCGCGAAGGCTGGCTCCTGGGCCCGCGCGGGGAAAAGGGCGGCGGGGTGGACGAGGACG
AGGAGATGGATGAGGTGAGCCTGCTGTCCGAGCTGGTGGAGGCGGCCTCCTTCCTGCAGGTCACGTCCCT
GCTGCAGCTGCTGCTGTCCCAGGTGCGGCTCAATAACTGCCTGGAGATGTACCGCCTGGCGCAGGTGTAC
GGGCTGCCCGACCTGCAGGAGGCCTGCCTGCGCTTCATGGTCGTCCACTTCCACGAGGTGCTGTGCAAGC
CCCAGTTCCACCTCCTGGGGTCTCCTCCCCAAGCTCCAGGGGATGTCAGCCTGAAGCAGAGGCTGAGGGA
GGCCCGGATGACTGGGACTCCTGTCCTCGTGGCCCTCGGGGACTTCCTGGGGGGACCCCTGGCCCCTCAC
CCCTACCAGGGGGAGCCCCCGTCCATGCTCAGGTACGAGGAGATGACTGAGCGTTGGTTCCCGCTGGCCA
ACAACCTTCCTCCCGACCTGGTCAATGTCAGGGGCTATGGGTCTGCCATCCTGGACAACTACCTCTTCAT
AGTGGGCGGGTACAGGATCACTAGCCAGGAGATCTCCGCTGCGCATTCCTACAACCCCAGCACCAACGAG
TGGCTCCAGGTGGCCTCCATGAACCAGAAGAGGTCTAACTTCAAACTTGTGGCTGTTAATTCAAAACTCT
ATGCCATCGGAGGGCAGGCCGTTTCTAACGTTGAGTGTTACAACCCCGAGCAGGATGCGTGGAATTTTGT
GGCGCCCTTACCCAATCCTCTGGCTGAGTTCTCTGCCTGTGAGTGTAAGGGAAAAATTTATGTCATTGGA
GGATACACTACCAGAGACCGGAACATGAACATTTTGCAGTACTGCCCCTCTTCCGACATGTGGACGCTCT
TTGAAACATGTGACGTCCACATTCGCAAGCAGCAGATGGTGTCTGTGGAAGAGACCATCTACATCGTGGG
GGGGTGTCTCCACGAGCTGGGGCCCAACCGCAGGAGCAGCCAGAGCGAGGACATGCTCACCGTGCAGTCC
TACAACACCGTCACCCGCCAGTGGCTCTACCTCAAGGAGAACACGTCCAAATCGGGTCTTAACTTGACTT
GTGCGCTCCATAACGACGGCATCTACATCATGAGCAGAGACGTCACCCTGTCGACCAGCTTGGAACACCG
AGTGTTCCTCAAGTACAACATCTTTTCAGATAGTTGGGAAGCATTTCGGCGTTTTCCAGCTTTTGGACAT
AACTTGCTGGTTTCTTCTCTTTATCTGCCCAATAAAGCAGAAACATGA

Translation (505 aa):
MSAEEMVQIRLEDRCYPVSKRKLIEQSDYFRALYRSGMREALSQEAGGPEVQQLRGLSAPGLRLVLDFIN
AGGAREGWLLGPRGEKGGGVDEDEEMDEVSLLSELVEAASFLQVTSLLQLLLSQVRLNNCLEMYRLAQVY
GLPDLQEACLRFMVVHFHEVLCKPQFHLLGSPPQAPGDVSLKQRLREARMTGTPVLVALGDFLGGPLAPH
PYQGEPPSMLRYEEMTERWFPLANNLPPDLVNVRGYGSAILDNYLFIVGGYRITSQEISAAHSYNPSTNE
WLQVASMNQKRSNFKLVAVNSKLYAIGGQAVSNVECYNPEQDAWNFVAPLPNPLAEFSACECKGKIYVIG
GYTTRDRNMNILQYCPSSDMWTLFETCDVHIRKQQMVSVEETIYIVGGCLHELGPNRRSSQSEDMLTVQS
YNTVTRQWLYLKENTSKSGLNLTCALHNDGIYIMSRDVTLSTSLEHRVFLKYNIFSDSWEAFRRFPAFGH
NLLVSSLYLPNKAET


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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