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Report for CCDS19516.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19516.2 Public Mus musculus 5 Idua 23 108 98 CCDS HistoryNCBI Gene:15932Re-query CCDS DB by CCDS ID:19516.2Re-query CCDS DB by GeneID:15932See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19516.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19516.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071650.12 ENSMUSP00000071577.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071650.12Link to Ensembl Protein Viewer:ENSMUSP00000071577.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071650Re-query CCDS DB by Protein ID:ENSMUSP00000071577
Original member Current member EBI ENSMUST00000112563.8 ENSMUSP00000108182.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112563.8Link to Ensembl Protein Viewer:ENSMUSP00000108182.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112563Re-query CCDS DB by Protein ID:ENSMUSP00000108182
Original member Current member NCBI NM_008325.4 NP_032351.2 Accepted alive Link to Nucleotide Sequence:NM_008325.4Link to Protein Sequence:NP_032351.2Re-query CCDS DB by Nucleotide ID:NM_008325Re-query CCDS DB by Protein ID:NP_032351Link to BLAST:NP_032351.2

Chromosomal Locations for CCDS 19516.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108669363 108669517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108670119 108670259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108679499 108679584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108679704 108679811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680111 108680206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680295 108680497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680571 108680750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680861 108681077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108681380 108681592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108681672 108681793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108681902 108682027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108682100 108682176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108683053 108683153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108683267 108683373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGCGACCCCCGCGTCCCTCCTCAGCTATGCTGACGTTTTTTGCTGCGTTCTTGGCCGCGCCCTTGGCGC
TGGCTGAGTCACCGTACCTGGTGCGTGTGGACGCAGCCCGCCCGCTGAGGCCTCTGTTGCCCTTCTGGAG
GAGCACCGGCTTCTGCCCCCCACTGCCTCACGACCAGGCTGACCAGTACGACCTTAGTTGGGACCAGCAA
CTGAACCTTGCCTACATAGGTGCCGTACCTCACAGTGGCATTGAGCAGGTCCGGATACACTGGCTGCTGG
ATCTCATCACAGCCAGGAAGTCACCTGGGCAGGGACTTATGTACAACTTCACCCACTTGGATGCATTCTT
GGACCTTCTCATGGAGAACCAGCTTCTCCCTGGATTTGAGCTCATGGGCAGTCCTTCTGGGTACTTCACG
GACTTTGATGACAAGCAGCAGGTGTTTGAATGGAAGGACCTGGTTTCTCTCTTGGCCAGGAGATACATTG
GTAGGTATGGGCTGACACACGTTTCCAAGTGGAACTTTGAGACTTGGAATGAACCAGACCACCATGACTT
TGACAACGTGTCCATGACCACACAAGGCTTCCTGAATTACTATGATGCCTGCTCTGAGGGGCTGCGCATT
GCCAGCCCCACTTTGAAGTTGGGTGGTCCTGGGGATTCCTTCCACCCCCTGCCAAGGTCACCAATGTGCT
GGAGCCTCCTGGGTCACTGTGCCAATGGAACCAACTTCTTCACTGGCGAGGTGGGCGTGCGTCTGGATTA
CATCTCCCTGCACAAGAAGGGTGCAGGTAGCTCCATCGCCATCCTGGAGCAGGAGATGGCAGTTGTGGAG
CAGGTCCAGCAGCTCTTCCCTGAGTTCAAGGATACCCCTATTTACAATGACGAGGCAGACCCTCTGGTGG
GCTGGTCCCTGCCACAACCTTGGAGAGCTGATGTGACTTATGCGGCCCTGGTGGTGAAGGTCATTGCACA
GCACCAGAACCTGCTGTTTGCCAACAGCAGTTCCTCCATGCGCTATGTGCTCCTCAGCAATGACAATGCC
TTCCTGAGCTACCACCCGTACCCTTTCTCCCAGCGCACACTTACTGCTCGATTCCAGGTCAACAATACTC
ACCCACCCCACGTGCAGTTGCTGCGAAAGCCAGTACTCACAGTCATGGGGCTCATGGCCCTGTTGGATGG
AGAACAACTCTGGGCAGAGGTCTCAAAGGCTGGGGCTGTGTTGGACAGCAATCATACAGTGGGTGTCCTG
GCCAGCACCCATCACCCTGAAGGCTCCGCAGCGGCCTGGAGTACCACAGTCCTCATCTACACTAGTGATG
ACACCCACGCACACCCCAACCACAGTATCCCTGTGACTCTTCGCCTGCGTGGGGTACCTCCTGGCTTGGA
TCTTGTCTACATAGTACTCTACTTAGACAATCAACTCAGCAGCCCCTACAGTGCGTGGCAGCACATGGGC
CAGCCAGTCTTCCCCTCTGCAGAGCAGTTCCGACGTATGCGCATGGTGGAGGACCCCGTGGCTGAGGCAC
CACGCCCCTTTCCTGCTAGGGGCCGCCTGACCCTACACCGGAAGCTTCCGGTGCCATCACTCCTGCTGGT
GCATGTATGCACACGCCCCTTGAAGCCACCTGGGCAGGTCAGCCGGCTCCGTGCACTGCCCCTGACACAT
GGACAGCTGATTTTGGTCTGGTCAGATGAGCGTGTGGGCTCCAAGTGCCTGTGGACATATGAGATCCAGT
TTTCCCAGAAAGGTGAAGAGTATGCCCCAATCAACAGGAGGCCGTCTACTTTTAACCTCTTTGTGTTCAG
CCCAGACACAGCTGTGGTCTCTGGCTCCTACCGAGTTCGAGCATTGGATTACTGGGCCCGGCCAGGCCCC
TTCTCCGACCCTGTGACTTACCTGGATGTCCCTGCCTCATGA

Translation (643 aa):
MRPPRPSSAMLTFFAAFLAAPLALAESPYLVRVDAARPLRPLLPFWRSTGFCPPLPHDQADQYDLSWDQQ
LNLAYIGAVPHSGIEQVRIHWLLDLITARKSPGQGLMYNFTHLDAFLDLLMENQLLPGFELMGSPSGYFT
DFDDKQQVFEWKDLVSLLARRYIGRYGLTHVSKWNFETWNEPDHHDFDNVSMTTQGFLNYYDACSEGLRI
ASPTLKLGGPGDSFHPLPRSPMCWSLLGHCANGTNFFTGEVGVRLDYISLHKKGAGSSIAILEQEMAVVE
QVQQLFPEFKDTPIYNDEADPLVGWSLPQPWRADVTYAALVVKVIAQHQNLLFANSSSSMRYVLLSNDNA
FLSYHPYPFSQRTLTARFQVNNTHPPHVQLLRKPVLTVMGLMALLDGEQLWAEVSKAGAVLDSNHTVGVL
ASTHHPEGSAAAWSTTVLIYTSDDTHAHPNHSIPVTLRLRGVPPGLDLVYIVLYLDNQLSSPYSAWQHMG
QPVFPSAEQFRRMRMVEDPVAEAPRPFPARGRLTLHRKLPVPSLLLVHVCTRPLKPPGQVSRLRALPLTH
GQLILVWSDERVGSKCLWTYEIQFSQKGEEYAPINRRPSTFNLFVFSPDTAVVSGSYRVRALDYWARPGP
FSDPVTYLDVPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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