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Report for CCDS12051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12051.1 Public Homo sapiens 19 WDR18 24 110 108 CCDS HistoryNCBI Gene:57418Re-query CCDS DB by CCDS ID:12051.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12051.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000585809.6 ENSP00000476117.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000585809.6Link to Ensembl Protein Viewer:ENSP00000476117.3Re-query CCDS DB by Nucleotide ID:ENST00000585809Re-query CCDS DB by Protein ID:ENSP00000476117
Original member Current member NCBI NM_001372085.1 NP_001359014.1 Accepted alive Link to Nucleotide Sequence:NM_001372085.1Link to Protein Sequence:NP_001359014.1Re-query CCDS DB by Nucleotide ID:NM_001372085Re-query CCDS DB by Protein ID:NP_001359014Link to BLAST:NP_001359014.1
Original member Current member NCBI NM_024100.4 NP_077005.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024100.4Link to Protein Sequence:NP_077005.2Re-query CCDS DB by Nucleotide ID:NM_024100Re-query CCDS DB by Protein ID:NP_077005Link to BLAST:NP_077005.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001359014.1 432 Q9BV38 432 100% 0 0
NP_077005.2 432 Q9BV38 432 100% 0 0

Chromosomal Locations for CCDS 12051.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 984354 984563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 985865 985975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 989762 989895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 990223 990364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 990852 990995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 991081 991145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 991227 991351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 991955 992121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 994020 994088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 994213 994344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGCGGCGCCCATGGAGGTGGCCGTGTGTACGGACTCGGCGGCCCCGATGTGGAGCTGCATCGTGTGGG
AACTTCACTCGGGCGCCAACCTGCTCACCTACCGCGGCGGCCAGGCGGGACCCCGCGGCCTGGCGCTGCT
CAATGGCGAGTATCTGCTGGCGGCGCAGCTGGGCAAGAATTACATCAGCGCCTGGGAGCTCCAGCGGAAG
GACCAGCTCCAGCAGAAGATCATGTGCCCCGGGCCTGTCACCTGTCTGACTGCATCACCCAATGGTCTCT
ACGTCCTGGCAGGAGTTGCAGAAAGCATCCACCTGTGGGAGGTCTCCACCGGGAACCTTCTGGTCATCCT
GAGTCGACACTACCAGGACGTCTCCTGCCTTCAGTTCACAGGGGACAGCAGCCACTTCATCTCAGGGGGC
AAGGACTGCCTGGTGCTGGTTTGGAGCCTCTGCAGCGTGCTGCAGGCCGACCCCTCCAGGATTCCGGCGC
CCAGGCACGTCTGGTCTCACCACGCGCTCCCCATCACGGACCTGCACTGCGGCTTTGGGGGCCCCCTGGC
CCGGGTGGCCACCTCCTCACTGGACCAGACGGTGAAGCTATGGGAGGTCTCCTCGGGGGAGCTGCTGCTC
TCCGTCCTCTTTGACGTGTCCATCATGGCAGTGACCATGGACCTGGCTGAGCACCATATGTTCTGCGGGG
GCAGTGAGGGCTCCATCTTCCAGGTCGACCTCTTCACCTGGCCCGGACAGAGGGAGAGGAGCTTCCACCC
AGAGCAGGACGCCGGGAAGGTCTTCAAAGGGCACAGGAACCAGGTGACTTGCCTGTCAGTGTCCACTGAC
GGCAGCGTGCTGCTCTCAGGCTCCCACGACGAGACCGTGCGCCTCTGGGACGTGCAGAGCAAGCAGTGCA
TCCGGACGGTGGCCCTCAAAGGCCCAGTCACCAATGCCGCCATCCTGCTGGCGCCCGTCAGCATGCTGAG
CTCAGACTTCAGGCCCAGCCTGCCGCTGCCCCACTTCAACAAGCACCTGCTGGGCGCCGAGCACGGGGAC
GAGCCGCGCCACGGGGGCCTCACTCTGCGCCTGGGCCTCCACCAGCAGGGCTCGGAGCCCAGCTACCTGG
ACCGCACGGAGCAGCTGCAGGCCGTCCTGTGCAGCACCATGGAGAAGAGCGTGCTCGGCGGCCAGGACCA
GCTGCGCGTCCGTGTGACGGAGCTGGAGGACGAGGTGCGCAACCTGCGCAAGATCAATCGGGACCTGTTC
GACTTCTCCACGCGCTTCATCACGCGGCCGGCCAAGTGA

Translation (432 aa):
MAAPMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQRK
DQLQQKIMCPGPVTCLTASPNGLYVLAGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGG
KDCLVLVWSLCSVLQADPSRIPAPRHVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLL
SVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTD
GSVLLSGSHDETVRLWDVQSKQCIRTVALKGPVTNAAILLAPVSMLSSDFRPSLPLPHFNKHLLGAEHGD
EPRHGGLTLRLGLHQQGSEPSYLDRTEQLQAVLCSTMEKSVLGGQDQLRVRVTELEDEVRNLRKINRDLF
DFSTRFITRPAK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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