NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40091.1 Public Mus musculus 7 Parva 23 108 98 CCDS HistoryNCBI Gene:57342Re-query CCDS DB by CCDS ID:40091.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033030.13 ENSMUSP00000033030.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033030.13Link to Ensembl Protein Viewer:ENSMUSP00000033030.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033030Re-query CCDS DB by Protein ID:ENSMUSP00000033030
Original member Current member EBI ENSMUST00000106643.7 ENSMUSP00000102254.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106643.7Link to Ensembl Protein Viewer:ENSMUSP00000102254.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106643Re-query CCDS DB by Protein ID:ENSMUSP00000102254
Original member NCBI NM_020606.5 NP_065631.3 Updated not alive Link to Nucleotide Sequence:NM_020606.5Link to Protein Sequence:NP_065631.3Re-query CCDS DB by Nucleotide ID:NM_020606Re-query CCDS DB by Protein ID:NP_065631
Current member NCBI NM_020606.6 NP_065631.3 Accepted alive Link to Nucleotide Sequence:NM_020606.6Link to Protein Sequence:NP_065631.3Re-query CCDS DB by Nucleotide ID:NM_020606Re-query CCDS DB by Protein ID:NP_065631Link to BLAST:NP_065631.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065631.3 372 Q9EPC1 372 100% 0 0

Chromosomal Locations for CCDS 40091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112427965 112428100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112544177 112544266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112544733 112544803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112547511 112547613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112559929 112560069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112567763 112567878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112572871 112572929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112575355 112575374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112576400 112576461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112576936 112577004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112579656 112579757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112580950 112581022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112588540 112588616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCACATCCCCACAGAAGTCGCCCTTGGTCCCCAAATCACCCACTCCCAAGTCGCCTCCGTCCCGCA
AG
AAGGATGACTCGTTCTTGGGGAAACTCGGAGGGACGCTGGCCCGGAGGAAGAAAGCCAAAGAAGTATC
C
GAGTTCCAGGAGGAAGGAATGAACGCCATCAACCTGCCTCTTAGCCCCATCTCCTTCGAGCTGGACCCC
GAG
GACACTCTGCTGGAGGAGAATGAGGTCCGGACAATGGTCGATCCAAACTCACGCAATGACCCCAAAC
TT
CAAGAGCTGATGAAGGTGCTCATCGACTGGATCAATGACGTATTGGTGGGAGAAAGAATCATCGTGAA
G
GACCTCGCTGAAGATCTCTATGATGGCCAAGTCCTACAGAAGCTCTTCGAGAAACTGGAGAGTGAGAAG
CTC
AACGTGGCCGAGGTTACGCAGTCGGAGATCGCCCAGAAACAGAAGCTACAGACTGTGCTGGAGAAGA
TC
AATGAGACCCTGAAGCTTCCTCCCAGGAGCATCAAGTGGAACGTGGACTCTGTTCATGCCAAGAACCT
G
GTTGCCATCCTCCACCTGCTGGTTGCTCTGTCTCAATATTTCCGGGCACCCATCCGACTCCCAGACCAT
GTT
TCCATCCAAGTGGTTGTGGTCCAGAAACGAGAAGGGATCCTCCAGTCTCGACAAATCCAAGAGGAAA
TA
ACTGGTAACACAGAGGCCCTTTCCGGAAGGCATGAACGTGATGCCTTTGACACGCTGTTTGACCATGC
A
CCAGACAAACTCAATGTGGTGAAGAAGACCCTCATCACGTTCGTGAACAAGCATCTGAATAAACTGAAC
TTG
GAGGTCACAGAACTGGAGACACAGTTTGCAGATGGGGTTTACCTGGTGTTGCTCATGGGGCTCCTGG
AA
GGCTACTTTGTACCCCTGCACAGCTTCTTCCTGACCCCAGACAGCTTTGAACAGAAGGTCCTGAATGT
C
TCCTTTGCCTTTGAGCTCATGCAAGATGGAGGGCTGGAAAAGCCTAAACCGCGGCCAGAAGACATTGTC
AAC
TGTGACCTGAAGTCCACGCTGAGAGTGCTATACAACCTCTTCACCAAGTACCGGAATGTGGAGTGA


Translation (372 aa):
MATSPQKSPLVPKSPTPKSPPSRKKDDSFLGKLGGTLARRKKAKEVSEFQEEGMNAINLPLSPISFELDP
E
DTLL
EENEVRTMVDPNSRNDPKLQELMKVLIDWINDVLVGERIIVKDLAEDLYDGQVLQKLFEKLESEK
L
NVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVD
SVHAKNLVAILHLLVALSQYFRAPIRLPDH
V
SIQVVVVQ
KREGILQSRQIQEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLN
L
EVTELETQ
FADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIV
N
CDLKSTLRVLYNLFTKYRNVE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser