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Report for CCDS51673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51673.1 Public Mus musculus 5 Gigyf1 23 108 98 CCDS HistoryNCBI Gene:57330Re-query CCDS DB by CCDS ID:51673.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031727.9 ENSMUSP00000031727.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031727.9Link to Ensembl Protein Viewer:ENSMUSP00000031727.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031727Re-query CCDS DB by Protein ID:ENSMUSP00000031727
Original member NCBI NM_031408.2 NP_113596.2 Updated not alive Link to Nucleotide Sequence:NM_031408.2Link to Protein Sequence:NP_113596.2Re-query CCDS DB by Nucleotide ID:NM_031408Re-query CCDS DB by Protein ID:NP_113596
Current member NCBI NM_031408.3 NP_113596.2 Accepted alive Link to Nucleotide Sequence:NM_031408.3Link to Protein Sequence:NP_113596.2Re-query CCDS DB by Nucleotide ID:NM_031408Re-query CCDS DB by Protein ID:NP_113596Link to BLAST:NP_113596.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113596.2 1044 Q99MR1 1044 100% 0 0

Chromosomal Locations for CCDS 51673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137518952 137518986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137519083 137519212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137519310 137519405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137519506 137519617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137519737 137519845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137520028 137520068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137520212 137520376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137520547 137520800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137520885 137521002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137521848 137521982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137522123 137522223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137522378 137522549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137522661 137522827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137522955 137523055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137523137 137523256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137523402 137523502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137523799 137523881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137523962 137524108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137524189 137524413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137524651 137524841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137524931 137525091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137525172 137525359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137525430 137525559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137525652 137525704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3135 nt):
ATGGCAGCAGAGACACTCAACTTTGGGCCTGAGTGGCTGAGAGCCCTTTCGAGTGGTGGCAGCGTGGCCT
CTCCACCCCCATCTCCTGCCATGCCCAAATACAAGCTGGCAGATTACCGCTATGGGCGAGAGGAGATGCT
GGCCCTCTATGTCAAGGAGAACAAGGTCCCGGAGGAACTACAGGACAAGGAGTTTGCTGCAGTGTTACAA
GAGGAACCGCTGCAACCTCTGGCTCTGGAGCCTCTGACTGAGGAGGAGCAGAGAAACTTCTCGCTGTCGG
TGAACAGTGTGGCTGTGCTGAGACTGATGGGGAAAGGGGCTGGGCCCCCTTTGCCTGCCACCTCCCGTGG
CAGGGGCAGCACTCGGAGCCGAGGGCGAGGCCGTGGTGACAGCTGCTTTTACCAAAGAAGCATTGAGGAA
GGCGATGGGGCCTTCGGAAGGAATCCTCGGGAGATCCAGCGAAGCCAAAGCTGGGATGACAGAGGCGAGA
GGCGGTTTGAGAAGCCTGCAAGGAGGGATGGAGTACGGTCTGGCTTTGAGGAGGGAGGGGCTGGCCCAAG
GAAGGAGCATGCACGCTCAGACAGTGAGAATTGGCGCTCACTTCGAGAGGAGCAAGAGGATGATGGCAGC
TGGAGACTTGGGGCGGGACCCCGGCGAGATGGTGATCGCTGGCGTTCCACCAGCCCTGATGGTGGTCCCC
GCTCTGCTGGCTGGCGGGAGCATGGGGAGCGGAGGCGCAAGTTTGATTTTGATTTGCGAGGGGAGCGCGG
AGGGTGTGGTGAAGAGGATGGGCGGGTTGGGGGCGGCAACTCTCACCTCCGGAGATGCCGGGGGCTCGAT
GGCTTTGAAGATGACAAGGATGGGCTCCCCGAGTGGTGCCTGGAGGATGAGGATGAGGAGATGGGCACTT
TCGATGCCTCCGGAGCCTTCCTGCCCCTTAAGAAGGGCCCCAAGGAAGCCATCCCTGAGGAGCAGGAGCT
TGATTTCCGGGGCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCGTCAGAAGGGGTGGATGAAGAGAGG
CCTGAGGCAGGAGGGAAGGAGGCAACCCCATTGCCGCCTCCAGAGAACTCCAGCTCACCGTCTTCACTGC
CAGCCTTGGGTCCTCTCTGGACGACAAATGAGGAGGGTGGTGAGGCAGTGGAGAAAGAGCTGCCTCCTGC
TGAAGGTGACGAGTTGAGGGGACTGTCTCTGAGTCCTAGAATCAGTTCACCTCCTGGCCCACCTGGAGAT
CTAGAAGACGAAGAAGGCTTGAAGCACTTGCAGCAGGAGGCAGAGAAGCTGGTGGCCTCCCTGCAGGACA
GCTCCCTGGAGGAGGAGCAGTTCACCGCTGCCATGCAAACCCAGGGCCTCCGCCACTCCACAGCTGCCAC
TGCCCTTCCCCTCAGCCATGGCGCTGCCCGAAAGTGGTTCTACAAGGACCCACAGGGGGAAATCCAAGGC
CCTTTCACGACCCAGGAGATGGCTGAGTGGTTCCAGGCTGGCTACTTCTCCATGTCACTCTTAGTGAAGA
GGGGCTGCGATGAGGGTTTCCAGCCTCTGGGAGAGGTGATCAAGATGTGGGGCCGTGTGCCCTTTGCCCC
AGGGCCCTCGCCACCCCCGCTGCTGGGCAACATGGATCAGGAGCGGCTGAAGAAGCAGCAGGAGCTGGCT
GCGGCAGCCCTGTACCAGCAGCTGCAGCACCAGCACTTTCTGCAGCTGGTTGGCAGCCGCCAGCTCCCGC
AGTGTACGACGCTCCGGGAAAAGGCAGCTATGGGGGACCTGACGCCGCCGCAGCAGCAGCAGCTCACTAC
GTTCCTGCAGCAGCTCCAGGCTCTCAAAACCCCCAGAGGTGGAGACCAGAACCTGCTCCCGACGATGAGC
CGGTCCTTGTCGGTGCCAGATTCAGGCCCCCTCTGGGACTTACATACCTCAGCTTCATCACAGTCAGGTG
GTGAGGCCAGTCTTTGGGACATACCAATTAACTCTTCGACTCAGGGTCCAATTCTAGAACAGCTCCAACT
GCAGCATAAATTTCAAGAGCGCAGAGAAGTGGAGCTCAGGGCGAAGCGGGAGGAGGAGGAGCGCAAACGA
CGGGAGGAGAAGCGGCGCCAACAGCAGCAGCAGCAGGAGGAGCAGAAGCGACGGCAGGAAGAGGAGGAGC
TCTTTCGGCGCAAGCAGGTACGGCAGCAGGAATTGTTGCTGAAGCTGCTACAGCAGCAGCAAGCGACGAA
TGTCCCTGTGCCCCCTGCACCCAGCTCCCCACCCCCGCTCTGGGCTGGCCTAGCCAAGCAGGGCCTGTCC
ATGAAGACTCTGCTGGAGCTGCAGATGGAAAGTGAGCGCCAACTGCACAAGCAGGCGGCACCGCGGGAGC
CTCTGCGGGCCCAGGCCCCCAACCACCGAGTGCAGCTTGGGGGCTTGGGCTCTGCCCCTCTGAACCAGTG
GGTGTCTGAGGCTGGGCCACTATGGGGCGGGCCAGACAAGAGTGGGGGCAGCAGCGGTGGCAACCTGGGA
CTCTGGGAAGATACTCTCAAGAGTGGCGGGAGCCTGGCCCGAAGCCTGGGCCTGAAGAGCAGTCGGAGCA
GCCCGTCTCTCAGTGACTCGTACAGCCACCTGTCAGGCCGACCTGTTCGCAAAAAGACAGAAGAGGAAGA
GAAGTTGCTGAAGCTGCTGCAGGGCATCCCTCGGCCCCAGGACGGCTTCACGCAGTGGTGTGAGCAAATG
CTGCACACCCTGAGCACTGCGGGCAGCCTAGACGTTCCCATGGCTGTCGCCATCCTCAAGGAGGTGGAGT
CCCCTTACGATGTCCATGATTATATTCGTTCCTGCCTGGGGGACACGCTGGAAGCCAAAGAATTTGCCAA
ACAATTCCTGGAGCGGAGGGCCAAGCAGAAAGCCAGCCAACAGCGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGGAGGCCTGGCTGAGCAGCACCTCCCTACAGACAGCCTTTCAGGCCAACCACAGCACCA
AACTGGGCCCTGGGGAGGGCAGCAAGGCCAAAAGGCGGGCACTGATGCTTCACTCCGACCCTAGCATCTT
GGGGTACTCCCTGCACGGCCCTTCCGGTGAGATCGAGAGCGTGGATGACTACTGA

Translation (1044 aa):
MAAETLNFGPEWLRALSSGGSVASPPPSPAMPKYKLADYRYGREEMLALYVKENKVPEELQDKEFAAVLQ
EEPLQPLALEPLTEEEQRNFSLSVNSVAVLRLMGKGAGPPLPATSRGRGSTRSRGRGRGDSCFYQRSIEE
GDGAFGRNPREIQRSQSWDDRGERRFEKPARRDGVRSGFEEGGAGPRKEHARSDSENWRSLREEQEDDGS
WRLGAGPRRDGDRWRSTSPDGGPRSAGWREHGERRRKFDFDLRGERGGCGEEDGRVGGGNSHLRRCRGLD
GFEDDKDGLPEWCLEDEDEEMGTFDASGAFLPLKKGPKEAIPEEQELDFRGLEEEEEEEEEPSEGVDEER
PEAGGKEATPLPPPENSSSPSSLPALGPLWTTNEEGGEAVEKELPPAEGDELRGLSLSPRISSPPGPPGD
LEDEEGLKHLQQEAEKLVASLQDSSLEEEQFTAAMQTQGLRHSTAATALPLSHGAARKWFYKDPQGEIQG
PFTTQEMAEWFQAGYFSMSLLVKRGCDEGFQPLGEVIKMWGRVPFAPGPSPPPLLGNMDQERLKKQQELA
AAALYQQLQHQHFLQLVGSRQLPQCTTLREKAAMGDLTPPQQQQLTTFLQQLQALKTPRGGDQNLLPTMS
RSLSVPDSGPLWDLHTSASSQSGGEASLWDIPINSSTQGPILEQLQLQHKFQERREVELRAKREEEERKR
REEKRRQQQQQQEEQKRRQEEEELFRRKQVRQQELLLKLLQQQQATNVPVPPAPSSPPPLWAGLAKQGLS
MKTLLELQMESERQLHKQAAPREPLRAQAPNHRVQLGGLGSAPLNQWVSEAGPLWGGPDKSGGSSGGNLG
LWEDTLKSGGSLARSLGLKSSRSSPSLSDSYSHLSGRPVRKKTEEEEKLLKLLQGIPRPQDGFTQWCEQM
LHTLSTAGSLDVPMAVAILKEVESPYDVHDYIRSCLGDTLEAKEFAKQFLERRAKQKASQQRQQQQQQQQ
QQQQEAWLSSTSLQTAFQANHSTKLGPGEGSKAKRRALMLHSDPSILGYSLHGPSGEIESVDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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