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Report for CCDS21619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21619.1 Public Mus musculus 7 Or52d3 23 108 98 CCDS HistoryNCBI Gene:57250Re-query CCDS DB by CCDS ID:21619.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098174.2 ENSMUSP00000095776.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098174.2Link to Ensembl Protein Viewer:ENSMUSP00000095776.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098174Re-query CCDS DB by Protein ID:ENSMUSP00000095776
Original member Current member EBI ENSMUST00000217466.1 ENSMUSP00000149192.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217466.1Link to Ensembl Protein Viewer:ENSMUSP00000149192.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217466Re-query CCDS DB by Protein ID:ENSMUSP00000149192
Original member Current member EBI ENSMUST00000215585.2 ENSMUSP00000149455.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215585.2Link to Ensembl Protein Viewer:ENSMUSP00000149455.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215585Re-query CCDS DB by Protein ID:ENSMUSP00000149455
Original member Current member NCBI NM_147074.2 NP_667285.2 Accepted alive Link to Nucleotide Sequence:NM_147074.2Link to Protein Sequence:NP_667285.2Re-query CCDS DB by Nucleotide ID:NM_147074Re-query CCDS DB by Protein ID:NP_667285Link to BLAST:NP_667285.2

Chromosomal Locations for CCDS 21619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104579648 104580601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGATGCTCTCTGCTGCTATCCCCAATGAAACTGCCTTCCACCCTCCCACATTTGTTTTGCTTGGAATCC
CTGGGATGCAGGATCAGCATGTTTGGATTGCTATTCCCTTCTGCTCCATGTACATCCTTGCTCTGGTTGG
AAATGGTACCATCCTCTATATCATTATAACAGACAGGGCTCTCCATGAGCCAATGTACCTCTTCTTGTGT
CTGCTTTCTATCACTGATCTGGTTCTCTGTTCAACAACATTGCCTAAAATGCTGGCAATATTCTGGCTCA
GATCCCATGTCATTTCCTACCATGGCTGCCTCACTCAGATGTTTTTTGTTCATGCAGTCTTTGCCACAGA
GTCAGCTGTTCTGCTGGCCATGGCTTTTGATCGATATGTTGCTATCTGCAGACCACTCCACTATACATCC
ATCCTCAATGCTGTTGTAATTGGAAAGATTGGCCTGGCATGCGTGACTCGTGGCCTTCTCTTTGTCTTCC
CCTTTGTCATTCTCATTGAACGTTTACCCTTCTGTGGACATCATATAATCCCTCACACTTACTGTGAGCA
CATGGGCATAGCCAAGCTCGCCTGTGCCAGCATCAAGCCTAACACCATCTATGGTCTTACTGTAGCACTT
TCAGTCACTGGCATGGATGTGGTCCTCATTGCAACCTCCTACATCCTGATTCTGCAGGCCGTGCTGCGAC
TGCCCTCAAAGGATGCCCAGTTCCGAGCATTCAGCACATGTGGAGCCCACATTTGTGTAATTCTTGTCTT
CTATATCCCCGCATTCTTTTCATTTTTCACTCACCGCTTTGGTCACCACGTGCCTCCTCAGGTACACATC
ATACTTGCAAATCTTTATCTCCTTGTGCCTCCTGTTCTCAACCCCCTAGTCTATGGCATCAATACCAAAC
AAATCCGCCTGAGAATACTTGACTTTTTTGTAAAGAGAAGGTGA

Translation (317 aa):
MMLSAAIPNETAFHPPTFVLLGIPGMQDQHVWIAIPFCSMYILALVGNGTILYIIITDRALHEPMYLFLC
LLSITDLVLCSTTLPKMLAIFWLRSHVISYHGCLTQMFFVHAVFATESAVLLAMAFDRYVAICRPLHYTS
ILNAVVIGKIGLACVTRGLLFVFPFVILIERLPFCGHHIIPHTYCEHMGIAKLACASIKPNTIYGLTVAL
SVTGMDVVLIATSYILILQAVLRLPSKDAQFRAFSTCGAHICVILVFYIPAFFSFFTHRFGHHVPPQVHI
ILANLYLLVPPVLNPLVYGINTKQIRLRILDFFVKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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