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Report for CCDS35237.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35237.2 Public Homo sapiens X ZNF630 24 110 108 CCDS HistoryNCBI Gene:57232Re-query CCDS DB by CCDS ID:35237.2See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 35237.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in an extended N-terminus that is more supported by available transcript and conservation data. The update adds a predicted KRAB domain to the protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35237.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276054.9 ENSP00000354683.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276054.9Link to Ensembl Protein Viewer:ENSP00000354683.4Re-query CCDS DB by Nucleotide ID:ENST00000276054Re-query CCDS DB by Protein ID:ENSP00000354683
Original member Current member EBI ENST00000409324.7 ENSP00000386393.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409324.7Link to Ensembl Protein Viewer:ENSP00000386393.3Re-query CCDS DB by Nucleotide ID:ENST00000409324Re-query CCDS DB by Protein ID:ENSP00000386393
Original member Current member NCBI NM_001037735.4 NP_001032824.2 Accepted alive Link to Nucleotide Sequence:NM_001037735.4Link to Protein Sequence:NP_001032824.2Re-query CCDS DB by Nucleotide ID:NM_001037735Re-query CCDS DB by Protein ID:NP_001032824Link to BLAST:NP_001032824.2
Original member Current member NCBI NM_001282201.2 NP_001269130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282201.2Link to Protein Sequence:NP_001269130.1Re-query CCDS DB by Nucleotide ID:NM_001282201Re-query CCDS DB by Protein ID:NP_001269130Link to BLAST:NP_001269130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032824.2 657 Q2M218-1 657 100% 0 0
NP_001269130.1 657 Q2M218-1 657 100% 0 0

Chromosomal Locations for CCDS 35237.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48058468 48060203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48060450 48060545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48060819 48060945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48066872 48066886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGATTGAGTCCCAGGAACCAGTGACATTTGAGGATGTGGCTGTGGACTTCACGCAGGAAGAGTGGCAGC
AGTTGAATCCTGCTCAGAAGACCCTGCATAGGGATGTGATGCTGGAGACCTATAATCACCTGGTCTCCGT
GGGGTGTTCAGGTATAAAACCAGATGTAATCTTTAAGTTGGAACATGGAAAGGACCCATGGATCATAGAG
AGTGAGTTGTCAAGGTGGATCTACCCAGACAGAGTGAAAGGCCTTGAATCTTCCCAGCAGATCATTTCTG
GAGAACTTTTATTTCAAAGGGAGATACTAGAAAGAGCCCCAAAGGATAATTCATTGTACTCTGTTTTAAA
AATCTGGCATATTGATAATCAGATGGATAGATATCAAGGAAATCAAGACAGAGTTTTGAGGCAGGTCACA
GTCATCAGTCGTGAAACATTGACTGATGAGATGGGTTCCAAGTACAGTGCATTTGGGAAAATGTTCAATC
GGTGCACAGACCTTGCTCCTTTAAGTCAAAAATTCCATAAGTTTGATTCATGTGAAAATAGCTTGAAGTC
TAATTCAGACTTACTAAATTATAACAGGAGCTATGCAAGAAAGAACCCCACTAAGAGATTTAGATGTGGG
AGACCACCTAAGTATAATGCTTCCTGTTCTGTGCCTGAGAAGGAAGGCTTCATTCATACTGGAATGGAGC
CCTATGGAGATAGTCAATGTGAAAAAGTTCTCAGTCATAAGCAAGCCCATGTTCAGTATAAGAAATTTCA
AGCCAGAGAGAAACCCAATGTTTGTAGTATGTGTGGGAAAGCCTTTATCAAGAAGTCACAGCTCATTATA
CATCAAAGAATTCATACTGGAGAGAAACCATATGTATGTGGAGATTGTAGGAAAGCCTTCAGTGAGAAAT
CACACCTCATTGTGCATCAGAGGATTCATACTGGGGAGAAACCCTATGAATGTACTAAGTATGGAAGAGC
ATTCTCCCGGAAGTCACCTTTCACTGTTCATCAGAGAGTCCATACTGGAGAGAAACCCTATGAGTGTTTT
GAGTGTCCAAAAGCTTTCTCCCAGAAGTCACATCTAATTATACATCAGAGAGTTCATACCAGAGAGAAGC
CCTTTGAATGCAGTGAATGCAGGAAAGCCTTCTGTGAGATGTCTCACCTTTTTATACACCAGATAACTCA
TACTGGGAAGAAGCCCTATGAATGTACTGAATGTGGGAAGACCTTCCCTCGGAAAACACAGCTCATTATA
CATCAGAGAACGCATACTGGAGAGAAGCCCTATAAGTGTGGTGAATGTGGGAAAACTTTCTGCCAACAGT
CCCACCTCATAGGACATCAAAGAATTCATACAGGAGAAAAACCTTATGTGTGTACTGACTGTGGGAAGGC
CTTTTCCCAGAAGTCACACCTCACTGGCCATCAAAGACTTCATACTGGAGAGAAACCTTATATGTGTACT
GAATGTGGAAAATCCTTCTCTCAGAAATCACCTCTTATCATACACCAGAGAATTCATACAGGGGAGAAAC
CTTATCAGTGTGGTGAATGTGGCAAAACCTTCTCCCAGAAATCACTCCTCATTATTCATCTGAGAGTTCA
CACAGGGGAGAAACCTTATGAGTGTACTGAGTGTGGGAGGGCCTTTTCCCTGAAGTCACATCTCATTCTA
CATCAGAGAGGTCATACTGGAGAGAAACCCTATGAATGTAGTGAATGTGGAAAGGCCTTCTGTGGAAAGT
CTCCACTCATTATACATCAGAAAACTCATCCTAGGGAGAAAACCCCTGAATGTGCTGAGTCTGGAATGAC
TTTTTTCTGGAAATCACAGATGATTACATATCAGAGAAGACACACTGGGGAGAAACCCTCCAGATGCAGT
GACTGTGGGAAGGCATTCTGCCAGCATGTATACTTTACTGGGCATCAGAATCCATATAGGAAAGACACCT
TGTATATATGCTGA

Translation (657 aa):
MIESQEPVTFEDVAVDFTQEEWQQLNPAQKTLHRDVMLETYNHLVSVGCSGIKPDVIFKLEHGKDPWIIE
SELSRWIYPDRVKGLESSQQIISGELLFQREILERAPKDNSLYSVLKIWHIDNQMDRYQGNQDRVLRQVT
VISRETLTDEMGSKYSAFGKMFNRCTDLAPLSQKFHKFDSCENSLKSNSDLLNYNRSYARKNPTKRFRCG
RPPKYNASCSVPEKEGFIHTGMEPYGDSQCEKVLSHKQAHVQYKKFQAREKPNVCSMCGKAFIKKSQLII
HQRIHTGEKPYVCGDCRKAFSEKSHLIVHQRIHTGEKPYECTKYGRAFSRKSPFTVHQRVHTGEKPYECF
ECPKAFSQKSHLIIHQRVHTREKPFECSECRKAFCEMSHLFIHQITHTGKKPYECTECGKTFPRKTQLII
HQRTHTGEKPYKCGECGKTFCQQSHLIGHQRIHTGEKPYVCTDCGKAFSQKSHLTGHQRLHTGEKPYMCT
ECGKSFSQKSPLIIHQRIHTGEKPYQCGECGKTFSQKSLLIIHLRVHTGEKPYECTECGRAFSLKSHLIL
HQRGHTGEKPYECSECGKAFCGKSPLIIHQKTHPREKTPECAESGMTFFWKSQMITYQRRHTGEKPSRCS
DCGKAFCQHVYFTGHQNPYRKDTLYIC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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