NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
240.1 Public Homo sapiens 1 PITHD1 24 110 108 CCDS HistoryNCBI Gene:57095Re-query CCDS DB by CCDS ID:240.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246151.9 ENSP00000246151.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246151.9Link to Ensembl Protein Viewer:ENSP00000246151.4Re-query CCDS DB by Nucleotide ID:ENST00000246151Re-query CCDS DB by Protein ID:ENSP00000246151
Original member Current member NCBI NM_020362.5 NP_065095.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020362.5Link to Protein Sequence:NP_065095.2Re-query CCDS DB by Nucleotide ID:NM_020362Re-query CCDS DB by Protein ID:NP_065095Link to BLAST:NP_065095.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065095.2 211 Q9GZP4-1 211 100% 0 0

Chromosomal Locations for CCDS 240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23778516 23778713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23779438 23779481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23779864 23779941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23785675 23785779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23786315 23786423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23787275 23787376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGTCGCACGGTCACAGCCACGGCGGGGGTGGCTGCCGCTGCGCCGCCGAACGGGAGGAGCCGCCCGAGC
AGCGCGGCCTGGCCTACGGCCTGTACCTGCGCATCGACCTGGAGCGGCTGCAATGCCTTAACGAGAGCCG
CGAGGGCAGCGGCCGCGGCGTCTTCAAGCCGTGGGAGGAGCGGACCGACCGCTCCAAGTTTGTTGAAAGT
GATGCAGATGAAGAGCTTCTGTTTAATATTCCATTTACGGGCAATGTCAAGCTCAAAGGCATCATTATAA
TGGGAGAGGATGATGACTCACACCCCTCTGAGATGAGACTGTACAAGAATATTCCACAGATGTCCTTTGA
TGATACAGAAAGGGAGCCAGATCAGACCTTTAGTCTGAACCGGGATCTTACAGGAGAATTAGAGTATGCT
ACAAAAATTTCTCGTTTTTCAAATGTCTATCATCTCTCAATTCATATTTCAAAAAACTTCGGAGCAGATA
CGACAAAGGTCTTTTATATTGGCCTGAGAGGAGAGTGGACTGAGCTTCGCCGACACGAGGTGACCATCTG
CAATTACGAAGCATCTGCCAACCCAGCAGACCATAGGGTCCATCAGGTTACCCCACAGACACACTTTATT
TCCTAA

Translation (211 aa):
MSHGHSHGGGGCRCAAEREEPPEQRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVES
DADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELEYA
TKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELRRHEVTICNYEASANPADHRVHQVTPQTHFI
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH