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Report for CCDS18720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18720.1 Public Mus musculus 4 Gmeb1 23 108 98 CCDS HistoryNCBI Gene:56809Re-query CCDS DB by CCDS ID:18720.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030733.8 ENSMUSP00000030733.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030733.8Link to Ensembl Protein Viewer:ENSMUSP00000030733.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030733Re-query CCDS DB by Protein ID:ENSMUSP00000030733
Original member Current member EBI ENSMUST00000105964.1 ENSMUSP00000101584.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105964.1Link to Ensembl Protein Viewer:ENSMUSP00000101584.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105964Re-query CCDS DB by Protein ID:ENSMUSP00000101584
Original member Current member EBI ENSMUST00000105965.7 ENSMUSP00000101585.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105965.7Link to Ensembl Protein Viewer:ENSMUSP00000101585.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105965Re-query CCDS DB by Protein ID:ENSMUSP00000101585
Original member Current member EBI ENSMUST00000168553.7 ENSMUSP00000131331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168553.7Link to Ensembl Protein Viewer:ENSMUSP00000131331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168553Re-query CCDS DB by Protein ID:ENSMUSP00000131331
Original member Current member NCBI NM_001122992.1 NP_001116464.1 Accepted alive Link to Nucleotide Sequence:NM_001122992.1Link to Protein Sequence:NP_001116464.1Re-query CCDS DB by Nucleotide ID:NM_001122992Re-query CCDS DB by Protein ID:NP_001116464Link to BLAST:NP_001116464.1
Original member Current member NCBI NM_020273.2 NP_064669.2 Accepted alive Link to Nucleotide Sequence:NM_020273.2Link to Protein Sequence:NP_064669.2Re-query CCDS DB by Nucleotide ID:NM_020273Re-query CCDS DB by Protein ID:NP_064669Link to BLAST:NP_064669.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116464.1 562 Q9JL60 562 100% 0 0
NP_064669.2 562 Q9JL60 562 100% 0 0

Chromosomal Locations for CCDS 18720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132225765 132226462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132227872 132227994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132230986 132231123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132232012 132232143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132234749 132234906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132237111 132237214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132242325 132242449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132245986 132246068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132251675 132251802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGCCAATGCAGAAGTGAGCGTCCCAGTGGGAGATGTGGTTGTGGTACCCACTGAAGGAAATGAAGGGG
AGAACCCGGAAGACACTAAAACTCAAGTGATCTTGCAGTTACAGCCTGTGCAACAAGGGATTTATGAAGC
TGGGTCGGAGAATAGCGCAGCAGTTGTAGCCGTAGAGACCCACTCAATACACAAAATCGAGGAAGGAATT
GATGCAAGCAGTATAGAAGGGAACGAGGACATGGAGATCGCTTACCCTATAACCTGTGGGGAGAGTAAAG
CTGTCCTCCTCTGGAAGAAGTTCGTGTGTCCAGGAATAAACGTGAAGTGTGTCAAGTTTAATGACCAGCT
GATCAGTCCCAAGCACTTCGTTCACCTGGCTGGCAAGTCCACCCTGAAGGACTGGAAGAGAGCCATCCGT
CTAGGCGGCATCATGCTCAGGAAGATGATGGACTCTGGACAGATCGATTTTTACCAGCATGACAAAGTTT
GCTCCAATACCTGCAGGAGCACCAAATTTGACCTCCTGATCAGCAGTGCGAGGGCTCCAGTGCCAGGACA
GCAGACAAGTGTGGTGCAGACCCCCACCTCGGCCGATGGGAACATCACACAGATCGCCATCTCAGAGGAG
AGCATGGAAGAGGCAGGGCTGGAGTGGAACTCAGCTCTCACCGCCGCTGTCACCATGGCCACAGAGGAGG
GTATAAAGAAAGAGTCTGAAGAGATTTCAGAGGACACTTTGATGTTCTGGAAGGGGATAGCTGATGTAGG
GTTGATGGAGGAGGTCGTCTGCAACATCCAGAAGGAGATGGAAGAGCTGCTCAGGGGCGTTCAGCAGCGG
CTCATTCAGGCCCCTTTCCAGGTCACAGATGCTGCTGTTCTAAACAATGTGGCGAACACATTTGGCCTAA
TGGACGCGGTCAAGAGAGTTTTGGACAACAGACGGAAGCAAGTGGAGCAGGGCGAGGAGCAGTTTCTCTA
CACCCTGGCAGACTTGGAACGGCAGTTGGAGGAGCAAAAAAAGCAAGCCCAAGATCCCAGACTGAAATCC
CAGACAGTTCAAAATGTGGTACTGATGCCCGTGAGCACCCCAAAGCCTCCAAAAAGACCCCGGCTCCAGC
GGCCAGCCTCCACCACCGTCCTGAGCCCTTCTCCCGTCCAGCAGCCTCAGTTTACTGTCATCTCTCCCAT
CACCATTACTCCTGTGGGCCAGTCCTTCTCCATGGGCAACATCCCAGTGGCTACCCTCAGCCAGGGCTCC
AGTCCTGTGACTGTCCACACACTGCCTTCTGGCCCTCAGCTCTTCCGCTATGCCACGGTGGTTTCCTCTG
CCAAGAGCAACTCACCAGACACAGTGACCATCCACCCTTCCTCAAGTTTGGCACTGCTAAGCTCCACCTC
TATGCAGGATGGGAGTTCCCTGGGCAACATGGCCACCATGGTGAGCCCCATGGAGCTGGTGGCCATGGAG
TCCGGCCTGACGTCAGCAATCCAGGCTGTTGAAAGCACCTCTGAGGATGGGCAGACCATCATTGAAATCG
ACCCTGCCCCAGACTCCGAGGCTGACGACACTGAGGGCAAAGCAGTCATCTTGGAGACAGGGCTGAGGAC
TGAGGAGAAAGTGGTAGCCGAAATGGAAGAACACCAGCATCAGGTCCACAATGTGGAGATTGTGGTCTTG
GAGGACTGA

Translation (562 aa):
MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENSAAVVAVETHSIHKIEEGI
DASSIEGNEDMEIAYPITCGESKAVLLWKKFVCPGINVKCVKFNDQLISPKHFVHLAGKSTLKDWKRAIR
LGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSARAPVPGQQTSVVQTPTSADGNITQIAISEE
SMEEAGLEWNSALTAAVTMATEEGIKKESEEISEDTLMFWKGIADVGLMEEVVCNIQKEMEELLRGVQQR
LIQAPFQVTDAAVLNNVANTFGLMDAVKRVLDNRRKQVEQGEEQFLYTLADLERQLEEQKKQAQDPRLKS
QTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQGS
SPVTVHTLPSGPQLFRYATVVSSAKSNSPDTVTIHPSSSLALLSSTSMQDGSSLGNMATMVSPMELVAME
SGLTSAIQAVESTSEDGQTIIEIDPAPDSEADDTEGKAVILETGLRTEEKVVAEMEEHQHQVHNVEIVVL
ED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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