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Report for CCDS27958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27958.1 Public Mus musculus 16 Litaf 23 108 98 CCDS HistoryNCBI Gene:56722Re-query CCDS DB by CCDS ID:27958.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023143.13 ENSMUSP00000023143.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023143.13Link to Ensembl Protein Viewer:ENSMUSP00000023143.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023143Re-query CCDS DB by Protein ID:ENSMUSP00000023143
Original member Current member EBI ENSMUST00000117360.7 ENSMUSP00000112667.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117360.7Link to Ensembl Protein Viewer:ENSMUSP00000112667.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117360Re-query CCDS DB by Protein ID:ENSMUSP00000112667
Original member Current member NCBI NM_019980.2 NP_064364.1 Accepted alive Link to Nucleotide Sequence:NM_019980.2Link to Protein Sequence:NP_064364.1Re-query CCDS DB by Nucleotide ID:NM_019980Re-query CCDS DB by Protein ID:NP_064364Link to BLAST:NP_064364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064364.1 161 Q9JLJ0 161 100% 0 0

Chromosomal Locations for CCDS 27958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10960943 10961051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10963257 10963413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10966425 10966644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGTCGGCTCCAGGACCTTACCAAGCAGCTGCAGGCCCTTCAGTAGTGCCCACCGCACCCCCAACCTATG
AAGAAACAGTGGGTGTCAACAGTTACTACCCAACGCCCCCAGCACCTATGCCGGGACCAGCCACAGGGCT
CATTACAGGCCCAGATGGGAAGGGAATGAATCCACCTTCGTACTACACCCAGCCTGTGCCTGTCCCCAAC
GCCAACGCAATTGCCGTGCAGACCGTTTATGTGCAGCAGCCTGTCTCCTTCTATGACCGCCCCGTCCAGA
TGTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCCAGCTGTCCTACAATGCGGGAGCCCTCACCTGGCT
CTCCTGTGGCAGTCTGTGTCTGCTGGGATGCGTTGCTGGCTGCTGCTTCATCCCGTTCTGCGTAGACGCC
CTACAGGATGTGGACCACTACTGCCCCAACTGCAAAGCGCTCCTGGGCACCTACAAGCGCTTGTAG

Translation (161 aa):
MSAPGPYQAAAGPSVVPTAPPTYEETVGVNSYYPTPPAPMPGPATGLITGPDGKGMNPPSYYTQPVPVPN
ANAIAVQTVYVQQPVSFYDRPVQMCCPSCSKMIVTQLSYNAGALTWLSCGSLCLLGCVAGCCFIPFCVDA
LQDVDHYCPNCKALLGTYKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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