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Report for CCDS17298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17298.1 Public Mus musculus 3 Actl6a 23 108 98 CCDS HistoryNCBI Gene:56456Re-query CCDS DB by CCDS ID:17298.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029214.13 ENSMUSP00000029214.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029214.13Link to Ensembl Protein Viewer:ENSMUSP00000029214.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029214Re-query CCDS DB by Protein ID:ENSMUSP00000029214
Original member NCBI NM_019673.2 NP_062647.2 Updated not alive Link to Nucleotide Sequence:NM_019673.2Link to Protein Sequence:NP_062647.2Re-query CCDS DB by Nucleotide ID:NM_019673Re-query CCDS DB by Protein ID:NP_062647
Current member NCBI NM_019673.3 NP_062647.2 Accepted alive Link to Nucleotide Sequence:NM_019673.3Link to Protein Sequence:NP_062647.2Re-query CCDS DB by Nucleotide ID:NM_019673Re-query CCDS DB by Protein ID:NP_062647Link to BLAST:NP_062647.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062647.2 429 Q9Z2N8 429 100% 0 0

Chromosomal Locations for CCDS 17298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32708856 32708880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32711868 32711944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32712101 32712275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32714517 32714617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32715416 32715513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32718031 32718125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32718368 32718474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32718567 32718656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32719901 32719962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32720186 32720300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32720435 32720515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32722620 32722715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32725247 32725333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32726522 32726602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGAGCGGCGGCGTGTACGGCGGAGATGAAGTTGGCGCTCTTGTTTTTGACATTGGATCGTACACAGTGA
GGGCTGGCTATGCTGGCGAGGACTGCCCTAAGGTTGATTTCCCCACGGCTATCGGTGTGGTGCTGGAGAG
AGATGACGGAAGTACAATGATGGAGATTGATGGTGACAAAGGCAAGCAGGGCGGGCCCACCTACTACATA
GACACCAATGCCCTCCGCGTGCCCAGGGAGAACATGGAGGCCATCTCACCACTCAAGAATGGCATGGTTG
AAGACTGGGATAGTTTCCAGGCCATTTTGGATCATACATACAAGATGCATGTCAAATCCGAAGCCAGCCT
GCATCCTGTTCTCATGTCGGAAGCACCGTGGAACACCAGGGCGAAGAGAGAGAAACTGACAGAGTTGATG
TTTGAGCACTACAGCATCCCTGCATTCTTCCTTTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGTC
GTTCTACTGGGCTGATTTTGGACAGTGGAGCTACCCACACCACTGCGATTCCAGTCCACGATGGCTATGT
TCTTCAACAAGGCATTGTGAAATCCCCTCTGGCTGGAGACTTCATTACCATGCAGTGCAGAGAACTCTTC
CAGGAAATGAACATAGAACTCATTCCTCCTTACATGATTGCATCAAAAGAGGCTGTTCGAGAAGGTTCTC
CAGCCAACTGGAAAAGAAAAGAGAAACTGCCCCAGGTTACAAGGTCTTGGCACAATTACATGTGCAACTG
CGTCATCCAGGATTTTCAAGCTTCCGTTCTTCAGGTGTCAGACTCCACCTACGACGAACAAGTGGCTGCA
CAGATGCCAACCGTCCACTACGAATTCCCCAATGGCTACAACTGTGATTTTGGGGCAGAGCGGCTGAAAA
TTCCTGAAGGGTTATTTGACCCTTCCAACGTAAAGGGACTGTCTGGGAACACGATGCTGGGAGTCAGTCA
CGTTGTCACAACCAGCGTCGGAATGTGTGACATCGACATCAGACCAGGTCTCTACGGCAGTGTGATCGTA
GCAGGAGGAAACACGCTAATACAGAGTTTCACTGACAGGTTAAATAGAGAGCTTTCTCAGAAAACTCCAC
CAAGTATGCGGTTGAAACTGATTGCAAACAACACGACGGTGGAGCGGAGGTTCAGCTCATGGATTGGTGG
CTCTATCCTAGCATCTTTGGGTACCTTTCAACAGATGTGGATTTCTAAACAGGAATATGAAGAAGGAGGG
AAGCAGTGTGTAGAAAGAAAATGCCCTTGA

Translation (429 aa):
MSGGVYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQGGPTYYI
DTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELM
FEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELF
QEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAA
QMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIV
AGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGG
KQCVERKCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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