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Report for CCDS16586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16586.1 Public Mus musculus 2 Ivd 23 108 98 CCDS HistoryNCBI Gene:56357Re-query CCDS DB by CCDS ID:16586.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028807.5 ENSMUSP00000028807.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028807.5Link to Ensembl Protein Viewer:ENSMUSP00000028807.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028807Re-query CCDS DB by Protein ID:ENSMUSP00000028807
Original member NCBI NM_019826.4 NP_062800.1 Updated not alive Link to Nucleotide Sequence:NM_019826.4Link to Protein Sequence:NP_062800.1Re-query CCDS DB by Nucleotide ID:NM_019826Re-query CCDS DB by Protein ID:NP_062800
Current member NCBI NM_019826.5 NP_062800.1 Accepted alive Link to Nucleotide Sequence:NM_019826.5Link to Protein Sequence:NP_062800.1Re-query CCDS DB by Nucleotide ID:NM_019826Re-query CCDS DB by Protein ID:NP_062800Link to BLAST:NP_062800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062800.1 424 Q9JHI5 424 100% 0 0

Chromosomal Locations for CCDS 16586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118862021 118862167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118869435 118869524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118869731 118869782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118871378 118871547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118872885 118872978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118873168 118873304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118874665 118874761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118876316 118876409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118876888 118876969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118877661 118877765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118877875 118877947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118880453 118880586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCGACTGCAATCCGGCTGCTGGGACGGCGAGTTTCCAGTTGGAGACTGCGGCCATCACCGTCGCCCC
TCGCTGTCCCGCGGCGGGCCCACTCGATATTGCCTGTGGACGATGATATCAACGGGCTAAACGAGGAGCA
GAAGCAGCTTCGTCATACTATATCTAAGTTTCTTCAAGAGAACCTGGCCCCCAAGGCCCAAGAGATTGAT
CAAACCAATGACTTCAAGAACCTGAGAGAGTTCTGGAAACAGCTGGGGAGCCTGGGCGTACTGGGCATCA
CAGCCCCCGTTCAGTATGGTGGCTCTGGCCTGGGCTACCTAGAACATGTGTTGGTAATGGAAGAGATATC
CCGGGCTTCGGGAGCAGTGGGGCTCAGCTACGGTGCTCACTCCAACCTCTGCGTCAACCAGATTGTTCGA
AATGGGAATGAGGCACAGAAAGAGAAATACCTTCCCAAGCTCATCAGTGGTGAGTTCATCGGAGCCTTGG
CCATGAGTGAACCCAATGCTGGCTCTGACGTTGTCTCCATGAAGCTAAAAGCAGAAAAGAAAGGAGATCA
CTATGTTCTGAATGGCAACAAGTTCTGGATCACCAATGGCCCTGATGCTGATATCCTAGTCGTGTATGCC
AAGACAGATTTGACCGCTGTGCCAGCTTCTCGGGGCATCACAGCCTTCATTGTGGAGAAGGGTATGCCTG
GTTTTAGTACCTCCAAGAAGCTTGACAAGCTGGGTATGAGGGGCTCCAACACCTGCGAGCTGGTCTTTGA
AGACTGCAAGGTTCCTGCCGCTAACGTCCTGAGCCAGGAGAGTAAGGGGGTCTACGTATTGATGAGCGGG
CTGGACCTAGAGCGCCTGGTGCTAGCAGGTGGGCCCCTTGGGATCATGCAGGCTGTCCTGGACCACACCA
TTCCCTACTTGCATGTGAGGGAGGCCTTTGGCCAGAAGATCGGCCAATTCCAGCTGATGCAGGGAAAGAT
GGCCGACATGTACACCCGCCTCATGGCAAGTCGACAGTACGTCTACAATGTCGCCAAAGCCTGTGACGAG
GGCCACATCATTCCCAAGGACTGTGCCGGTGTGATTCTGTATGCAGCCGAGTGTGCCACACAGGTAGCCC
TGGACGGCATTCAGTGTCTAGGTGGAAATGGCTACATCAATGACTTCCCCATGGGCCGCTTTCTACGAGA
TGCCAAACTGTATGAGATCGGAGCTGGGACCAGTGAAGTGAGGCGGTTGGTCATTGGCCGAGCTTTCAAT
GCAGACTTCCGCTAG

Translation (424 aa):
MATAIRLLGRRVSSWRLRPSPSPLAVPRRAHSILPVDDDINGLNEEQKQLRHTISKFLQENLAPKAQEID
QTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVR
NGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYA
KTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSG
LDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMYTRLMASRQYVYNVAKACDE
GHIIPKDCAGVILYAAECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFN
ADFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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