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Report for CCDS20713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20713.1 Public Mus musculus 6 Sinhcaf 23 108 98 CCDS HistoryNCBI Gene:56306Re-query CCDS DB by CCDS ID:20713.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054080.14 ENSMUSP00000050952.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054080.14Link to Ensembl Protein Viewer:ENSMUSP00000050952.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054080Re-query CCDS DB by Protein ID:ENSMUSP00000050952
Original member Current member EBI ENSMUST00000111562.7 ENSMUSP00000107187.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111562.7Link to Ensembl Protein Viewer:ENSMUSP00000107187.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111562Re-query CCDS DB by Protein ID:ENSMUSP00000107187
Original member Current member EBI ENSMUST00000081956.11 ENSMUSP00000107188.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081956.11Link to Ensembl Protein Viewer:ENSMUSP00000107188.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081956Re-query CCDS DB by Protein ID:ENSMUSP00000107188
Original member Current member EBI ENSMUST00000204435.2 ENSMUSP00000145487.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204435.2Link to Ensembl Protein Viewer:ENSMUSP00000145487.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204435Re-query CCDS DB by Protein ID:ENSMUSP00000145487
Original member NCBI NM_001355645.1 NP_001342574.1 Updated not alive Link to Nucleotide Sequence:NM_001355645.1Link to Protein Sequence:NP_001342574.1Re-query CCDS DB by Nucleotide ID:NM_001355645Re-query CCDS DB by Protein ID:NP_001342574
Current member NCBI NM_001355645.2 NP_001342574.1 Accepted alive Link to Nucleotide Sequence:NM_001355645.2Link to Protein Sequence:NP_001342574.1Re-query CCDS DB by Nucleotide ID:NM_001355645Re-query CCDS DB by Protein ID:NP_001342574Link to BLAST:NP_001342574.1
Original member NCBI NM_019643.4 NP_062617.2 Updated not alive Link to Nucleotide Sequence:NM_019643.4Link to Protein Sequence:NP_062617.2Re-query CCDS DB by Nucleotide ID:NM_019643Re-query CCDS DB by Protein ID:NP_062617
Current member NCBI NM_019643.5 NP_062617.2 Accepted alive Link to Nucleotide Sequence:NM_019643.5Link to Protein Sequence:NP_062617.2Re-query CCDS DB by Nucleotide ID:NM_019643Re-query CCDS DB by Protein ID:NP_062617Link to BLAST:NP_062617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342574.1 221 Q8C8M1 221 100% 0 0
NP_062617.2 221 Q8C8M1 221 100% 0 0

Chromosomal Locations for CCDS 20713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 148922871 148923030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148926013 148926163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148928509 148928635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148930551 148930650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148933002 148933129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATATGCAGAGCCAAGTCCT
CCAGCTCCCGGTTCACGGACAGTAAACGTTACGAAAAGGACTTCCAGAGCTGTTTTGGGTTGCATGAGAC
TCGCTCAGGAGACATCTGTAATGCCTGTGTGCTGCTTGTGAAAAGATGGAAGAAGTTGCCGGCAGGATCA
AAAAAAAACTGGAATCACGTGGTAGATGCAAGAGCAGGCCCTAGTCTAAAGACAACATTGAAACCAAAGA
AAGTGAAAACTCTATCTGGAAACAGGATGAAAAGCAACCAGATCAGCAAACTGCAGAAGGAATTTAAACG
CCACAACTCTGATGCTCACAGTACCACCTCAAGTGCCTCTCCAGCCCAGTCTCCATGCTACAGTAACCAG
TCAGATGAGGGCTCAGATACAGAGATGGCTTCCAGCTCTAATAGAACTCCGGTTTTTTCCTTCTTAGATC
TTACCTACTGGAAAAGACAGAAAATATGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCAT
CGACACTCATCTCTTCAAGCCTTGCTGCAGCAGTAAGAAAGCAGCTGCCGAGAAGCCCGAGGAGCAGGGG
CCGGCACCTCTGCCCATCTCCACTCAGGAGTGGTGA

Translation (221 aa):
MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLVKRWKKLPAGS
KKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRMKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQ
SDEGSDTEMASSSNRTPVFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSSKKAAAEKPEEQG
PAPLPISTQEW


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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