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Report for CCDS18770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18770.1 Public Mus musculus 4 Extl1 23 108 98 CCDS HistoryNCBI Gene:56219Re-query CCDS DB by CCDS ID:18770.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030643.2 ENSMUSP00000030643.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030643.2Link to Ensembl Protein Viewer:ENSMUSP00000030643.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030643Re-query CCDS DB by Protein ID:ENSMUSP00000030643
Original member Current member NCBI NM_019578.2 NP_062524.2 Accepted alive Link to Nucleotide Sequence:NM_019578.2Link to Protein Sequence:NP_062524.2Re-query CCDS DB by Nucleotide ID:NM_019578Re-query CCDS DB by Protein ID:NP_062524Link to BLAST:NP_062524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062524.2 669 Q9JKV7 669 100% 0 0

Chromosomal Locations for CCDS 18770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134357648 134357830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134357978 134358146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134359085 134359245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134359749 134359835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134360532 134360621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134362301 134362407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134362583 134362715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134363083 134363202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134364581 134364688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134364898 134364988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134370958 134371718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGCTGTGGAGAAGAAAGTCCTTCTGGCTGGCGTTGTCAGCCTTCTGGCTCCTCCTCGTCCTCCTAGGAG
TC
TTCCCCCTTCGCCTGGCAGTGTTGCCCGGTCCTCTTCCAGGGCGCTCCCAAGGCTGGCCCCGCTGGCT
G
GATGCTGCCTTCTTACAGAGTTTCTCCCAGTCTGAGACGAACCCAGAAGATGTCGCACAGCTCCCTCGG
GTC
TCTCGGGGAAGCAGCTGCACCTGGGGAGCCTGCTTTGACACCTCCAAGTGTAGGGGAAAGGTCCTCA
AG
ATCTTTGTGCACTCCCCGGCTGGTCCGACCTCTGAGGCTCAGCGCAGGATCCTGGATTCCTTGGAAGG
C
TCCCGCTACTCTGCACTCAGCCCAGCAGACGCTTGCCTTCTCCTTTTTCTCCCCAGCCAGGATCGTAGA
GGA
GCCTGCGGGCCCCTGCCTCCGAACTGGAACGGAGGCCGGAACCATCTGGTGTTGAGTCTCTACCCAG
CC
CCTTGCACCAGGCTGGGACAGGCGATGGTAGCTGAGGCCAGCCCCTCCTCGGACATCTTCCGACCGGG
C
TTCGATTTAGCGCTCCCGTATCTCCCCGAAGCTCACCCATTGCGAGGTGGGGCTCCCGGCAAGCTGCAG
CAG
CACAGTCCCCAACCTGGGGCCACCTTACTGGCGGTAGCAGAGGAGAAAGGCAGGTGGCGTATCACAA
GC
ACCCACGCCTCAGCCTGCCTCTGGGACAGGCACTGTGAGCAAGACCCTGGACCCCAGCAGACCTACCC
A
GGAGAGACCCTTCCCAATGCCACCTTCTGCCTCATCCCTGGTCACCGATCTGCCACCTCCTGCTTTCTC
CAA
GCCCTTCAGGCCGGCTGCATCCCCGTGCTCCTCAGCCCCCGCTGGGAGCTGCCTTTCTCTGAAGTCA
TC
GACTGGACCAAGGCAGCCATCATTGCTGATGAGAGACTCCCACTGCAGGTCCTGGCTGCCCTCCGTGA
A
ATGCTCCCTTCGAGGGTCCTCGCCCTGCGCCAGCAGACCCAGTTTCTGTGGACCGCTTACTTCTCCTCG
GTG
GAAAAAGTTATCCATACCACCCTAGAGATTATTCAGGACCGGATCTGGGGTGCATCAGGTCACCCCT
CA
CTGATGTGGAATAGCCCCCCGGGAGCACTCTTGGCGCTGCCCACATTTTCCACGAGCCTTCAAGACTT
C
CCCTTTTATCATCTGCAACTGGGCTCTGGCCCTGGGAGCAGTTTCAGCGCCGTGATCTGGGTGGGAGCC
TCT
GGAGAGTCCCTGCTGAAGCTCATCCAGGAGGTGGCAGGTTCTCGGCACTGTGCCCAGATCCTGATTC
TC
TGGAACAGTGAGAAGCTGCCCCCTGACAGGTGGCCCGAGACAGCAGTGCCCCTAACAGTCATCAAGGG
G
CACAGGAAGGTCAGCAACCGGTTCTTCCCGTACAGCAACATCAGCACCAATGTTATCCTCAGCCTTGAT
GCT
CAGAGCACTCTTTCTACCAGTGAGGTGGACTTTGCCTTTGTGGTGTGGCAGAGCTTTCCTGAGCGGA
TG
GTGGGCTTTCTGTCTGGAAGCCACTTCTGGGATGAGGCCCAGGGTGGCTGGGGCTACCGTACTGGGAT
G
ACCAATGAGTTCTCCATGGTCCTGACCACGGCTGCCTTCTACCACAGGTACTACCACACCCTCTTCACC
CAC
TCCCTGCCTAAGGCCCTGAGGACCATAGCTGATGAGACTCCCACCTGTGTTGACGTCCTGATGAACT
TC
CTGGTAGCCACCGTCACCAAACTGCCCCCTATCAAGGTGCCTTATGGGAGGCAGCACCCGGAGGCTGT
G
CCAATGGATTCTGGGGATCCACGACCAGTGCCGGAGCCTCAGCCCCTGGATCAGGACTGCATCAACCGT
TTA
GCAGCAGGGTTCGGCCACATGCCTCTGGTTTCCTCTCAAGTGCGTCTGGATCCGGTGTTGTTCAAGG
AC
CCGGTATCGGTGCAACGCAAGAAGTATCGCAGTCTAGAGAAGCCATAG


Translation (669 aa):
MLWRRKSFWLALSAFWLLLVLLGVFPLRLAVLPGPLPGRSQGWPRWLDAAFLQSFSQSETNPEDVAQLPR
V
SRGSSCTWGACFDTSKCRGKVLKIFVHSPAGPTSEAQRRILDSLEGSRYSALSPADACLLLFLPSQDRR
G
ACGPLPPNWNGGRNHLVLSLYPAPCTRLGQAMVAEASPSSDIFRPGFDLALPYLPEAHPLRGGAPGKLQ
Q
HSPQPGATLLAVAEEKGRWRITSTHASACLWDRHCEQDPGPQ
QTYPGETLPNATFCLIPGHRSATSCFL
Q
ALQ
AGCIPVLLSPRWELPFSEVIDWTKAAIIADERLPLQVLAALREMLPSRVLALRQQTQFLWTAYFSS
V
EKVIHTTLE
IIQDRIWGASGHPSLMWNSPPGALLALPTFSTSLQDFPFYHLQLGSGPGSSFSAVIWVGA
S
GESLLKLIQEVAGSRHCAQ
ILILWNSEKLPPDRWPETAVPLTVIKGHRKVSNRFFPYSNISTNVILSLD
A
QSTLSTSE
VDFAFVVWQSFPERMVGFLSGSHFWDEAQGGWGYRTGMTNEFSMVLTTAAFYHRYYHTLFT
H
SLPKALRTIADETPTCVDVLMNFLVATVTKLPPIKVPYGRQHPEAVPM
DSGDPRPVPEPQPLDQDCINR
L
AAGFGHMPLVSSQVRLDPVLFKDPVSVQRKKYRSLEKP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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